Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28740 863 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G45990 73 / 3e-13 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G41770 69 / 5e-12 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 66 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13210 48 / 2e-05 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041573 [exp] 1133 / 0 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013624 [exp] 276 / 4e-89 AT5G28740 318 / 9e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003866 [exp] 160 / 7e-46 AT5G28740 149 / 6e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034294 [exp] 74 / 1e-13 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 70 / 3e-12 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10003865 [exp] 50 / 2e-07 AT5G28740 75 / 5e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039811 [exp] 53 / 7e-07 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10018580 [exp] 52 / 1e-06 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10029327 [exp] 50 / 8e-06 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035600 [exp] 977 / 0 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G043812 [exp] 228 / 8e-71 AT5G28740 236 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 71 / 1e-12 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 70 / 2e-12 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.013G135300 [exp] 46 / 0.0001 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022346 pacid=23139399 polypeptide=Lus10022346 locus=Lus10022346.g ID=Lus10022346.BGIv1.0 annot-version=v1.0 ATGTCGCATCATAAGATCGAGAATATGGGGTCTAGTGACGAGGAAGAAGTAGCAGATGGTCTGGAGCAGAATGGCTTGGAAGTGGAGAATCGGTTAGATG TCAATTCAAAGTTTGAGAAGAAATTACTCTCTGGATTTTGGTTAAATGATGACAAGGATGTGGATTTGATACTAGCTCGATTTGACTATCTGATGGAAAG AAGGCCTGAGCTGGCTAATAGTGTCCTCTTGAGGCAAAATCCCCACAATGTGGAACAATGGCACCGAAGGGTGAAGCTATTTGAGGGCAATCCCCACAAG CAGATATTGACGTATACCGAGGCTGTGAGAACAGTTGATCCAATGAAAGCAGTTGGAAAGCCTCACACTCTTTGGGTTGCTTTCGCGAAGCTGTATGAGA AACATAACGATCTTGTCAATGCAAGGGTGATTTTTGACAAGGCTGTGCAGGTAAATTATAAAACTGTTGACAATTTGGCTAGTGTTTGGTGTGAGTGGGC AGAGATGGAAATCAGGCACAAAAATTTCAAAGCTGCTCTGGAGCTTTTAAGGCGGGCAACAGCAGAACCATCAGTTGAGGTCAAACGAAGGGTGGCTGCT GATGGGAACGAACCAGTCCAGATAAAGCTGCACAAGTCTTTGAGACTCTGGGCTCTTTATGTTGATCTAGAGGAGGGTCTAGGAACTCTAGAGTCGACTC GTGCTGTTTATGAGAGGATATTGGACCTGAGAATAGCTACTCCACAGATTATTATCAATTATGCATGGCTTTTGGAGGAAAATAAGTACTTCGAAGATGC ATTCAAGGTGTACGAGAGAGGGGTCAAAATATTCAAGTACCCTCATGTGAAAGACATATGGGTAACTTATTTGTCAAAGTTTGTAAAGAGATATGGCAAG ACAAAGCTGGAACGATCTAGAGAATTGTTTGACCATGCTATTGAAATGACCCCTGCGGACTCTGTGAAACCTTTGTATCTTCAGTATGCCAAGCTTGAAG AGGATTATGGTTTGGCCAAGCGAGCTATGAAAGTATATGATCAAGCCACCAAGGCTGTTCCCAGCAATGAGAAATTGGGCATGTATGAAATTTATATCGC CCGTGCTTCTGAGATATTTGGGGTTCCCCAAACAAGAGAGATATATGAACAGGCAATAGACTCTGGTCTCCCGGAAAAAGATGTGAAGACAATGTGTATC AGATATGCAGAGTTAGAGAAGAACTTAGGAGAAATAGACCGGGCACGAGGAATATATGGATATGCCTCTCAGTTTGCTGATCCAAGATCTGATCAAGATT TCTGGAGCAAGTGGCATGACTTTGAGGTGCTTCATGGAAATGAAGATACCTTTAGAGAAATGCTGCGAGTTAAACGAACTGTTACGGCCAGTTTCAGTCA GACACACTTTATTTTGCCAGAGTATATGATGCAGAAGGATCAAAGGATGAGTATTGATGATGCCAAAGATAAGTTGAAACAAGCTGGGCTCCCTGAGGAT GAAATGGCTGCTCTTGAAAAGCAGCTAGCACCACCAGTTACAACTAATGACAATGCCGGCAAAGACGGCAACAGAACAGTTGGATTCGTGAGCGCAGGAG TACATACACAGACTGATGGAGGGTTAAAGCTTAACACAAATCTGGAAGACATTGAGCTCCCTGAAGAAAGCGACTCTGAGGATGACGATGAGAAAGTTGA AATCGCGCAGAAAGAGGTTCCTGAGGAGGTGTTTGGGGGATTGTTGAGAAAGAGGGATGAGGCGGAAAAAGACAGCGATGGTGGTGCAGCGAAGGACAAG GATGATGGTGAAAGCCGGCTCGGGGCTCTCGAGAGAATAAAAAGACTAAAACGAGGGTGA
AA sequence Show only first row Show all	>Lus10022346 pacid=23139399 polypeptide=Lus10022346 locus=Lus10022346.g ID=Lus10022346.BGIv1.0 annot-version=v1.0 MSHHKIENMGSSDEEEVADGLEQNGLEVENRLDVNSKFEKKLLSGFWLNDDKDVDLILARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPHK QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYEKHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHKNFKAALELLRRATAEPSVEVKRRVAA DGNEPVQIKLHKSLRLWALYVDLEEGLGTLESTRAVYERILDLRIATPQIIINYAWLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK TKLERSRELFDHAIEMTPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPSNEKLGMYEIYIARASEIFGVPQTREIYEQAIDSGLPEKDVKTMCI RYAELEKNLGEIDRARGIYGYASQFADPRSDQDFWSKWHDFEVLHGNEDTFREMLRVKRTVTASFSQTHFILPEYMMQKDQRMSIDDAKDKLKQAGLPED EMAALEKQLAPPVTTNDNAGKDGNRTVGFVSAGVHTQTDGGLKLNTNLEDIELPEESDSEDDDEKVEIAQKEVPEEVFGGLLRKRDEAEKDSDGGAAKDK DDGESRLGALERIKRLKRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	0	1
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	1.7	0.9162
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	3.0	0.8897
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	3.2	0.8847
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	4.0	0.8915
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	4.5	0.8715
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	4.8	0.8498
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	5.3	0.8889
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	6.9	0.8562
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	7.7	0.8598
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10015979 [exp]	8.1	0.8373

Compare expression of checked genes

Lus10022346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.