Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28740 299 / 1e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041573 [exp] 365 / 8e-122 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003867 [exp] 107 / 4e-31 AT5G28740 76 / 5e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003866 [exp] 51 / 6e-08 AT5G28740 149 / 6e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035600 [exp] 328 / 8e-108 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 41 / 0.0003 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 40 / 0.0004 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022347 pacid=23139495 polypeptide=Lus10022347 locus=Lus10022347.g ID=Lus10022347.BGIv1.0 annot-version=v1.0 ATGTCAATATCGAAAGACCTATATCCATCCCAGGATGATCTGCCATACGAGGAGGAGCTATTGCGTAATCCCTTTAGTCTCAAGCTTTGGTGGCGCTACT TAGTAGCCCGTCGAGATGCCCCTTTCAAGAAGAGGTTCGTTATCTACGAGCGGGCCCTCAAGGCACTGCCCGGAAGTTACAAGCTCTGGCACGCATATCT TACGGAACGCCTGGATGTTGTAAGGAATCTTCCAATTACTCACTCTCAGTATGATGCTCTTAACAATACATTTGAGAGGGCTTTGGTTACTATGCACAAG ATGCCTCGTATCTGGATAATGTACTTGCAGAGCTTGACCGCCCAAAAATTGATCAACCGGACTCGCAGAGCTGCCGACAGGGCTCTTTGTGCCTTGCCTG TCACGCAGCATGATAGGATATGGGAGCTCTATTTGAAGTTTGTGAGTCAGGATGGGATCCCAATTGAGACTTCCTTGAGAGTGTACCGTAGGTATCTGAA GTATGACCCTGGTCATATTGAGGATTTCGTTGAAGACGAAGCATACTTTGTGGCTTGA
AA sequence Show only first row Show all	>Lus10022347 pacid=23139495 polypeptide=Lus10022347 locus=Lus10022347.g ID=Lus10022347.BGIv1.0 annot-version=v1.0 MSISKDLYPSQDDLPYEEELLRNPFSLKLWWRYLVARRDAPFKKRFVIYERALKALPGSYKLWHAYLTERLDVVRNLPITHSQYDALNNTFERALVTMHK MPRIWIMYLQSLTAQKLINRTRRAADRALCALPVTQHDRIWELYLKFVSQDGIPIETSLRVYRRYLKYDPGHIEDFVEDEAYFVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	0	1
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	1.4	0.9585
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	2.8	0.9564
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	3.5	0.9518
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	4.2	0.9415
AT5G11560			catalytics (.1)		Lus10022143 [exp]	4.5	0.9462
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	6.9	0.9466
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	7.3	0.9260
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	8.9	0.9397
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10029695 [exp]	12.4	0.9194
					Lus10009498 [exp]	13.4	0.9308

Compare expression of checked genes

Lus10022347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.