Plant FIBer expression Database

Lus10022348 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041572
[exp]
281 / 3e-96 AT3G01860 77 / 1e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G332500
[exp]
120 / 2e-33 AT3G01860 96 / 3e-24 unknown protein
Potri.008G176300
[exp]
46 / 8e-06 AT3G01860 67 / 2e-13 unknown protein
Potri.010G058700
[exp]
44 / 3e-05 AT3G01860 83 / 4e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10022348 pacid=23139408 polypeptide=Lus10022348 locus=Lus10022348.g ID=Lus10022348.BGIv1.0 annot-version=v1.0
ATGGGTTCATGTGTATCATCAGCGCTTCACAAGGGGTCCGCCATGAAAATGGGAGTGTCGTTTGGTTCCAAACCAGACGAGCTCGTGCTCCCTGAATCCC
CTGTCAAAGATAAGCACGTCACTCCCGCTGCTGCTCCCCTCGACCTTCCAATCAACCGCTTCCACAGCTATGGTATATTTCTTTTAATTTGCTCCAAATC
AATAATTGAAGTCCCGGAGGGGAAAGAAATTGAAAACCCTCAATCGCCAACAGGGCTACTGTTTGTTGCTCTTGCTGGAGAATTTGGTGAACTATACTTT
CTGAATTTGGTGAAGCATCATTGGTTTGGTTCTGGCAGTAAAGAGGAATCCTTTTTCGATTCCCAGCCCTGCATGAGGGAAAACCGCAATGAAGGAGAGG
ACACCACACAACCTTCTTCAGAGAGCCATACGATGAATGGAAATGGAAATGGGACACAGACAGAGGTGAAACAAAAGATGAGTGATTTCCTTCCCAAGTC
TGCTGAGGGCACACCATATGCTTCAGGTGTCAACTCTGTGTGCAGCAGCGAAAGGACTGCCAATGGAGAAGCTCTGGTGAGTGAGAAGTCATTCAAATCC
ATGCAGTGCTGCCTTCCGAGCATGATTTCTCGACGTAGTTTTAGTGATCGGAAGAAGAGGATGAGCCCAGCACCCATCACTGCGTAA
AA sequence
>Lus10022348 pacid=23139408 polypeptide=Lus10022348 locus=Lus10022348.g ID=Lus10022348.BGIv1.0 annot-version=v1.0
MGSCVSSALHKGSAMKMGVSFGSKPDELVLPESPVKDKHVTPAAAPLDLPINRFHSYGIFLLICSKSIIEVPEGKEIENPQSPTGLLFVALAGEFGELYF
LNLVKHHWFGSGSKEESFFDSQPCMRENRNEGEDTTQPSSESHTMNGNGNGTQTEVKQKMSDFLPKSAEGTPYASGVNSVCSSERTANGEALVSEKSFKS
MQCCLPSMISRRSFSDRKKRMSPAPITA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10022348
[exp]
0 1
AT1G67570 Protein of unknown function (D... Lus10006430
[exp]
1.4 0.8402
AT5G08030 AtGDPD6 glycerophosphodiester phosphod... Lus10040516
[exp]
2.4 0.8434
AT1G61065 Protein of unknown function (D... Lus10018474
[exp]
4.9 0.8173
AT4G10770 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10028445
[exp]
7.0 0.7952
AT5G35410 ATSOS2, CIPK24,... SNF1-RELATED PROTEIN KINASE 3.... Lus10019411
[exp]
7.7 0.8394
AT2G37570 SLT1 sodium- and lithium-tolerant 1... Lus10024406
[exp]
8.8 0.7964
AT1G33270 Acyl transferase/acyl hydrolas... Lus10020983
[exp]
10.2 0.7736
AT1G47128 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A,... Lus10018735
[exp]
12.6 0.7601
AT5G07920 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacy... Lus10034702
[exp]
13.6 0.8091
AT1G69510 cAMP-regulated phosphoprotein ... Lus10030448
[exp]
14.8 0.7750

Lus10022348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.