Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24400 379 / 3e-132 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 300 / 4e-102 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24410 278 / 2e-93 PGL4 6-phosphogluconolactonase 4 (.1) AT5G24420 272 / 5e-91 PGL5 6-phosphogluconolactonase 5 (.1) AT1G13700 259 / 1e-85 PGL1 6-phosphogluconolactonase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036919 [exp] 281 / 1e-94 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10037065 [exp] 281 / 2e-94 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007200 [exp] 429 / 8e-152 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G024400 [exp] 425 / 3e-150 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 381 / 7e-134 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.010G157200 [exp] 276 / 1e-92 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Potri.012G020100 [exp] 271 / 5e-91 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.008G097200 [exp] 265 / 3e-87 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.015G008401 [exp] 82 / 9e-20 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01182 [flax] [poplar] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Lus10022352 pacid=23171646 polypeptide=Lus10022352 locus=Lus10022352.g ID=Lus10022352.BGIv1.0 annot-version=v1.0 ATGGCATCCTCCTCCCTCTCCACCATCTCATTTTCACCTACCCTCCGCCGCACCATCTACTCCTCCGTTCGCTCCCTCCGTCTACCTCACCTCTCTTCCC TCCCTCACTTGCCCCTCTCTCACCTCTCGATAAGGTCCGCCGGATTACCGCCCAGATTTCCTCTTACTCCGCTCACCCCAATTACCAAGGCGTTTTCCTC GTCAACAGCTGGGATGGCGGCTTCCGCGGACAAGAAGAAGATCGAGGTTTTCGACACGGAGGAAGATCTCGCGGTTTCACTTGCTAAGTACACTGCCGAT CTTTCCGATAAGTTCTGCAAAGAGAGGGGATCCTTCACCGTCGTCGTTTCTGGAGGTTCTCTTATCAAGTCCCTCAGGAAATTGTTGGAGGCGCCGTATA TCGATTCGATAGACTGGTCGAAATGGCATGTGTTTTGGGTGGACGAGCGAGTTGTTCCCAAGGATCATGACGATAGTAACTACAAGCTCGCTTTTGATCT CTTTCTCTCCAAGGTACCGATTCTCCCTGGCAATGTTTACGCGATCAATGATGCTTTGTCTCCTGAGGGTGCCGCCGACGATTACGAGACCTGCCTCAAA CATTTAGTGAACTCAGGGGTGATAGCCACATCAAAAGCAAGTGGGTTCCCGAAGTTCGATGTCCAGCTTCTAGGCATGGGACCTGACGGTCATGTGGCTT CTCTATTTCCTGGACATCCGTTGCTGAACGAGAACAAGAAATGGGTTACTCACATCTTGGATTCGCCCAAACCGCCACCCGAAAGAATCACCTTTACTTA CCCTGTGATCAACTCCTCTGCCAACATTGCATTGGTAGTGTGCGGTGATGGTAAAGCCGGCGTCGTGCAAAGAGCATTAGGAGACAACAAGGGAAATGAA GAGGAGCCGCCGCTGCCAGTTATGCTGGTTTCCCCTGAAGGAGAGTTGAAGTGGTATTTGGACAAAGGGGCGGCCTCGAAACTGTAG
AA sequence Show only first row Show all	>Lus10022352 pacid=23171646 polypeptide=Lus10022352 locus=Lus10022352.g ID=Lus10022352.BGIv1.0 annot-version=v1.0 MASSSLSTISFSPTLRRTIYSSVRSLRLPHLSSLPHLPLSHLSIRSAGLPPRFPLTPLTPITKAFSSSTAGMAASADKKKIEVFDTEEDLAVSLAKYTAD LSDKFCKERGSFTVVVSGGSLIKSLRKLLEAPYIDSIDWSKWHVFWVDERVVPKDHDDSNYKLAFDLFLSKVPILPGNVYAINDALSPEGAADDYETCLK HLVNSGVIATSKASGFPKFDVQLLGMGPDGHVASLFPGHPLLNENKKWVTHILDSPKPPPERITFTYPVINSSANIALVVCGDGKAGVVQRALGDNKGNE EEPPLPVMLVSPEGELKWYLDKGAASKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	0	1
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	1.0	0.9406
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	2.4	0.9393
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	3.5	0.9109
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	5.5	0.9321
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	5.5	0.9280
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	6.5	0.9266
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	6.5	0.9275
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	7.7	0.8909
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	8.0	0.9310
AT1G72430			SAUR-like auxin-responsive pro...		Lus10013181 [exp]	8.8	0.8646

Compare expression of checked genes

Lus10022352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.