Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02330 99 / 1e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 97 / 4e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 96 / 2e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 92 / 2e-22 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19720 91 / 7e-22 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G16470 90 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G50990 87 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G28660 86 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G28640 86 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 86 / 6e-20 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022368 [exp] 262 / 2e-82 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008830 [exp] 218 / 1e-70 AT4G02750 97 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000213 [exp] 206 / 2e-63 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007772 [exp] 184 / 8e-57 AT4G37170 281 / 6e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 97 / 4e-24 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014212 [exp] 91 / 6e-22 AT5G37570 561 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030549 [exp] 91 / 9e-22 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015256 [exp] 89 / 3e-21 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027389 [exp] 89 / 4e-21 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018800 [exp] 174 / 2e-51 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G030200 [exp] 99 / 1e-24 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G014900 [exp] 94 / 6e-23 AT5G59600 334 / 6e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 94 / 1e-22 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G108000 [exp] 92 / 2e-22 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G020500 [exp] 89 / 3e-21 AT2G36980 725 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 89 / 4e-21 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 88 / 7e-21 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 88 / 9e-21 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G072500 [exp] 87 / 1e-20 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022353 pacid=23171683 polypeptide=Lus10022353 locus=Lus10022353.g ID=Lus10022353.BGIv1.0 annot-version=v1.0 ATGTGGAACTCCATGATTGTAGGATACGTAGATAACATTGGATGGCCATCGGAACAGATTGTACCGGATTCTTTTACGTTAGGAAGTGCCTTTAATGCTT GTGCTAATATGGCTTCTTTGAGAAAGGGTAAGGAGATTCATTCTATTGCTATTTCCCGAGGGTTGCAATCTGATGCATTCGTAGGAGCAGTTCTTGTGGA CATGTACTGTGCATGTCAGGATATAGTAGCTGCTCAGTTGGCTTTTGCTGAGGTTATTGATAACGATATCACCACCTGGAATGCTCTGATATTTGGATAC GCTAGCTTACACGATACTGAAAAGGTTCAAGTTTTGCTTCAGCAAATGAGGGAAGATGGTCACGAACCGAATTCGTACACATGGAATGGTATTCTGAAAT GTCATTTACAAGATGGCAAACTAGACTTAGCGGAGCAGTTATTATCTGAAATGCAATGA
AA sequence Show only first row Show all	>Lus10022353 pacid=23171683 polypeptide=Lus10022353 locus=Lus10022353.g ID=Lus10022353.BGIv1.0 annot-version=v1.0 MWNSMIVGYVDNIGWPSEQIVPDSFTLGSAFNACANMASLRKGKEIHSIAISRGLQSDAFVGAVLVDMYCACQDIVAAQLAFAEVIDNDITTWNALIFGY ASLHDTEKVQVLLQQMREDGHEPNSYTWNGILKCHLQDGKLDLAEQLLSEMQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10022353 [exp]	0	1

Compare expression of checked genes

Lus10022353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.