Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49350 598 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 566 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 535 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 447 / 3e-152 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 130 / 8e-32 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 124 / 1e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 120 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 120 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT2G20440 117 / 3e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 115 / 1e-27 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023237 [exp] 665 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 657 / 0 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 629 / 0 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 583 / 0 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 132 / 3e-34 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 132 / 1e-32 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 132 / 3e-32 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 128 / 3e-31 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006646 [exp] 128 / 5e-31 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024500 [exp] 715 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 702 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 606 / 0 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 599 / 0 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 131 / 5e-32 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 130 / 1e-31 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 124 / 2e-30 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 124 / 7e-30 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.005G227400 [exp] 121 / 1e-29 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 123 / 2e-29 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10022356 pacid=23171761 polypeptide=Lus10022356 locus=Lus10022356.g ID=Lus10022356.BGIv1.0 annot-version=v1.0 ATGAAAGCTCTGAGGCGAAGTCATACTTCGTCATCATCTTCAAATACTCCTTCTCCGTCGTCGTCTGGTTCAGGAACGTCGTCCTCTGCCTCTTCGTCGT CGTCGTCATCCTGGGTTCATTTGCGTTCCGTACTCTTCGTTGTAAACTCCTCCTCACCAGCTCATTCTTGTCATTCTGATCGGGGGCGTCTGAAATCGCC ATGGTCCCGCAGGAAAAGAAAACATGTTCTTACTCCTCAACAATGGTGTAGTTTATTTACAGCTGATGGGAAATTACGTGACGGCGGAGTCAAGTTTTTG AAGAAAGTTCGCAGCGGGGGTGTTGATCCAAGTATAAGACCAGAGGTTTGGCCATTTCTTCTTGGAGTCTATGAGTTGGAAAGTACTAAAGAAGAAAGGG AGCTAGTTAGAACCCAAAAAAGGAAAGAATATGAGAAACTTCGGAGACAATGCCGTCGACTCCTTAGGCGAAATAGTGGGAGCTTGAAATCGAGTGAAAA TGGAGAAACAATTGACAATGAGGATGATGGAGGTTCTACTCATGATACCGACTCTTCTAGTCATGAAGATGTAGTTAGTGCCAGGGAATCTCTTTCTAGT GAAGGAAAGAGTCCAGATATTGGTCATTCAGATGATCTACGTGTTGCATTATTAGAAGGCGATGATCGTGGTGGCCAGACACAGAGTGCTGATGCATCTG CACAAAATACCGAGTCATCCGACACAGAATCGTCTGAAGATTCTGTAGTCATTCAGGCCATTGCTGGAGAAAACAAGGAAGATAACGATGCTAATGTTTC TTCCAAAGAAGATACTTCTCCATCAGGGTCGGGTGACTTTTCAATGCACAAGTCTGTTGAAGATTTTGCTACATGGCAGCGTATTATCCGTGTCGATGCT GTTCGTGCTAACTCAGAATGGATACCTTACTCCCCTTCTCAGGCTTCCATATCAGAAGCGAGAGCCCAGCGTTCTGCTGCGGCTGTTGGGTTAAAGGAAC ACGAACATCTAGAGCCGTGCAGGATTTTCCATGCTGCACGACTAGTTGCAATACTTGAAGCCTATGCACTATACGACCCTGAAATTGGATACTGTCAAGG AATGAGTGACCTACTTAGCCCAATAATTGCAGTGATGCAAGAAGACCATGAAGCCTTTTGGTGTTTTGTGGGTTTCATGAAGAAGGCTCGACACAACTTT AGGCTTGATGAGGTTGGAATCCGCAGGCAGCTAAGTATAGTGTCTAAGATAATCAAATTCAAAGACTCACATCTCTATAGGCATTTGGAGAAGCTACAGG CTGAGGATTGTTTTTTCGTTTATAGGATGGTTGTGGTATTATTTAGGAGGGAGTTGAGTTTTGAGCAGACGCTGTGTTTGTGGGAGGGTATGGGGGCGGA TCAGGCAGCGATAAGGGCTGGGATTGGGAAATCTGCAGGTAGCAGAATCAGGCAGCGAGTACCGCCAACTGATGATTTGCTGCTTTATGCAATAGCGGCT TCAGTTTTGCAGAAGAGGAAACTGATAATAGAGAAGTACAGCAGCATGGATGAGATTCTAAAGGAATGCAATGGAATGTCTGGGCACCTTGATGTGTGGA AGCTCTTAGATGATGCGCATAATTTGGTGGTTAACTTGCATGAGAAGGTAGAGAGTCGTCCTCCTTCTAATAGCTAA
AA sequence Show only first row Show all	>Lus10022356 pacid=23171761 polypeptide=Lus10022356 locus=Lus10022356.g ID=Lus10022356.BGIv1.0 annot-version=v1.0 MKALRRSHTSSSSSNTPSPSSSGSGTSSSASSSSSSSWVHLRSVLFVVNSSSPAHSCHSDRGRLKSPWSRRKRKHVLTPQQWCSLFTADGKLRDGGVKFL KKVRSGGVDPSIRPEVWPFLLGVYELESTKEERELVRTQKRKEYEKLRRQCRRLLRRNSGSLKSSENGETIDNEDDGGSTHDTDSSSHEDVVSARESLSS EGKSPDIGHSDDLRVALLEGDDRGGQTQSADASAQNTESSDTESSEDSVVIQAIAGENKEDNDANVSSKEDTSPSGSGDFSMHKSVEDFATWQRIIRVDA VRANSEWIPYSPSQASISEARAQRSAAAVGLKEHEHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIIAVMQEDHEAFWCFVGFMKKARHNF RLDEVGIRRQLSIVSKIIKFKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEGMGADQAAIRAGIGKSAGSRIRQRVPPTDDLLLYAIAA SVLQKRKLIIEKYSSMDEILKECNGMSGHLDVWKLLDDAHNLVVNLHEKVESRPPSNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	0	1
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	4.2	0.8057
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	5.7	0.8386
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	9.3	0.7988
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10037646 [exp]	11.3	0.8198
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	15.1	0.8521
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	16.1	0.8327
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	21.4	0.8063
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	21.8	0.8258
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	22.1	0.7935
AT3G02280			Flavodoxin family protein (.1)		Lus10017589 [exp]	25.2	0.8079

Compare expression of checked genes

Lus10022356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.