Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 892 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 867 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 808 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 675 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G27020 657 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 642 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G48370 620 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 612 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G45450 236 / 8e-74 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022360 [exp] 1004 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 978 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 954 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 892 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 889 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 834 / 0 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10000879 [exp] 828 / 0 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10013323 [exp] 680 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 665 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055224 [exp] 947 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 794 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 781 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.012G024700 [exp] 774 / 0 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.017G150500 [exp] 656 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 654 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 652 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 642 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G151600 [exp] 642 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 622 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022358 pacid=23171764 polypeptide=Lus10022358 locus=Lus10022358.g ID=Lus10022358.BGIv1.0 annot-version=v1.0 ATGAGCCAGCAAACAGGGAGTACTAACCGTGCTGAAATCAACGAGAATGATCAGAGGCATGATGAAACCTTCGGCATAGAGGATTCAGCTATGATGGAGG AAGAAGAAGAAGTGAAGAGGATTGCACCATGGACGCAGCAACTGACGATTCGAGGGATCGTGACCAGCGTGGCGATTGGGATCATATACAGCATGATAGT GATGAAGCTTGGTCTCACCACCGGTTTAATACCGAACCTTAATGTCTCCGCAGCTCTGCTAGCGTTTGTGTTGGTGAAAACGTGGACCAAGCTGCTCGGA AAAGTAGGGGTCGTGTCCAAACCATTCACTAGGCAAGAGAACGCCTTGATTCAGACCTGTGGTACTGCTTGTTACAGCATTGCTGTTGCTGGTGGTTTTG GGTCATATTTGCTGGGGTTGAACAGGAAAACTTATGAGCAAGCTGGGGTTGATTCACAAGGGAACCACCCTGCAAGTGTGAAGGAACCTGGTGTAGGTTG GATGACTAGCTTCCTCTTTATCAGCAGTTTTGTTGGACTTCTTGCTCTCATTCCTCTTAGGAAGTGGCGATTCTGGTGCAGGAAGCAAGTCCAAGGGTTC ATGAGATTCTCTTGTATGAGCTTCATTTGGGCTTTCTTTCAGTGGTTCTACAGCGGTGGAGACACTTGCGGTTTTGTTAAGTTCCCCACCTTTGGATTGG CTGCTTGGAAGAACTCATTTTACTTTGATTTCAGCATGACTTATGTTGGAGCAGGAATGATTTGCTCCCATCTTGTGAATCTGTCTTTGCTCCTTGGTGC AGTGCTTTCCTGGGGTATAATGTGGCCATTGATCGGCGACCGCAAAGGAGATTGGTACTCTTCATCTCTGCCAGCAAGTAGTATGAAGAGTCTCAATGGT TACAAGGTATTTATTTCTATTGCTCTGATATTGGGGGATGGGTTGTACCAGTTTCTCAAGATAATTTATTTCACTTCTGTCAACATTCTTGCCCGTAGAA GGGCGAGGAAAAATATCCGACCAGCTCCAGATAGTCAGAATCAGGATCCAATGGATGTCGATCTTCGTAGAAACGAAATATTTATGAGGGAAAACATTCC TATTTGGGTAGCATGCGTCGGTTACGTAGCACTATCGATCGTATCAGTCATAGTGATCCCTCTAATGTTCCATGAACTGAAATGGTACTATGTAGTGGTC GCATACATTCTCGCTCCGGCTCTTAGTTTCTGCAATGCATATGGTGCCGGACTAACAGATATGAACATGGGCTACAACTATGGAAAAGTGGCACTCTTTG TGCTTGCTGCTCTATCTGGAACAGAAAATGGTTTGGTTGCAGGACTCGTGGGTTGTGGTCTGATTAAGTCCATCGTCTCGATCTCTTCGGATTTGATGCA CGATTTCAAAACCGGACACCTCACACTAACCTCGCCACGATCCATGCTTGTCAGCCAAGCTATCGGAACCGCCATAGGGTGTGTCGTGGCTCCCCTGACG TTTTTCCTCTTCTACAAGGCATTCGATGTTGGGAACCCCGATGGTGAGTACAAGGCTCCTTACGCGCTCATCTACCGGAACATGGGGATTCTCGGAGTGC AAGGATTCTCGGCCCTGCCTCAACACTGCCTGCAACTATGTTACGGGTTCTTTGGGTTTGCAGTAGTGGCGAATTTGTCGAAAGACTTGCTCCCTAAGAA ACTAGGTGAATGGATTCCATTGCCAATGGCAATGGCAGTGCCTTTCCTTGTAGGAGGATATTTTGCAATAGATATGTGTGTGGGGAGTTTGGTGGTGTTT GTGTGGCACAAGTTGAACAGCAGAAAGGCAAGTTTGATGGTTCCTGCAGTGGCTTCTGGGTTGATATGTGGAGATGGGTTGTGGATTTTGCCTTCTTCAC TGCTTGCTTTGGCCAAAGTTAAGCCTCCTATATGCATGGGTTTCTCTAAGAACAGCTAG
AA sequence Show only first row Show all	>Lus10022358 pacid=23171764 polypeptide=Lus10022358 locus=Lus10022358.g ID=Lus10022358.BGIv1.0 annot-version=v1.0 MSQQTGSTNRAEINENDQRHDETFGIEDSAMMEEEEEVKRIAPWTQQLTIRGIVTSVAIGIIYSMIVMKLGLTTGLIPNLNVSAALLAFVLVKTWTKLLG KVGVVSKPFTRQENALIQTCGTACYSIAVAGGFGSYLLGLNRKTYEQAGVDSQGNHPASVKEPGVGWMTSFLFISSFVGLLALIPLRKWRFWCRKQVQGF MRFSCMSFIWAFFQWFYSGGDTCGFVKFPTFGLAAWKNSFYFDFSMTYVGAGMICSHLVNLSLLLGAVLSWGIMWPLIGDRKGDWYSSSLPASSMKSLNG YKVFISIALILGDGLYQFLKIIYFTSVNILARRRARKNIRPAPDSQNQDPMDVDLRRNEIFMRENIPIWVACVGYVALSIVSVIVIPLMFHELKWYYVVV AYILAPALSFCNAYGAGLTDMNMGYNYGKVALFVLAALSGTENGLVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLT FFLFYKAFDVGNPDGEYKAPYALIYRNMGILGVQGFSALPQHCLQLCYGFFGFAVVANLSKDLLPKKLGEWIPLPMAMAVPFLVGGYFAIDMCVGSLVVF VWHKLNSRKASLMVPAVASGLICGDGLWILPSSLLALAKVKPPICMGFSKNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	0	1
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	2.0	0.8861
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022365 [exp]	2.4	0.8340
					Lus10041155 [exp]	3.7	0.7954
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	6.9	0.8567
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	13.6	0.7836
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	14.2	0.8393
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034414 [exp]	18.4	0.7980
					Lus10000510 [exp]	18.8	0.8354
AT3G22750			Protein kinase superfamily pro...		Lus10039357 [exp]	19.1	0.7718
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	20.0	0.8271

Compare expression of checked genes

Lus10022358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.