Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66930 294 / 6e-91 Protein kinase superfamily protein (.1) AT1G67000 295 / 4e-89 Protein kinase superfamily protein (.1) AT5G38280 289 / 6e-89 PR5K PR5-like receptor kinase (.1) AT5G38260 288 / 7e-89 Protein kinase superfamily protein (.1) AT1G66910 287 / 2e-88 Protein kinase superfamily protein (.1) AT1G66920 285 / 4e-88 Protein kinase superfamily protein (.1.2) AT1G70250 289 / 9e-88 receptor serine/threonine kinase, putative (.1) AT5G39030 288 / 3e-87 Protein kinase superfamily protein (.1) AT5G39020 287 / 4e-87 Malectin/receptor-like protein kinase family protein (.1) AT1G66980 290 / 3e-86 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008335 [exp] 717 / 0 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 684 / 0 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027119 [exp] 608 / 0 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025554 [exp] 544 / 0 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025545 [exp] 536 / 0 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10014924 [exp] 479 / 2e-162 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 476 / 3e-161 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027085 [exp] 445 / 1e-154 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027006 [exp] 425 / 5e-145 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125000 [exp] 539 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 522 / 3e-179 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 518 / 1e-177 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.017G008600 [exp] 455 / 1e-153 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 455 / 3e-153 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125200 [exp] 446 / 7e-152 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G034500 [exp] 417 / 6e-143 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 416 / 7e-142 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 412 / 9e-136 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 410 / 1e-134 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022359 pacid=23171674 polypeptide=Lus10022359 locus=Lus10022359.g ID=Lus10022359.BGIv1.0 annot-version=v1.0 ATGACCTCATCACCATTTATTTTGCTGCTGCTGCAACTAGTTCTGCAGAATTGCCAAGCTGTTGCCGATGGTGGGAACTGTGAACCTTCGTCCTGTGGGA ACATCCCCGTCATTAAGGATCCTTTTCGACTCACCACTGATCCCCATATATGCGGAAATTACAAATATAGCCTGTCATGTGAGAACAATACAACAATACT GTATCTGAGGAACTCTTCTACAAGATTCTATGTGCAAGCAATCAACTACAACAACTTGACAATCCGGTTGGTGGATGGTGGTGTGTACAGAGGCAACTGC TCCTCCTTTCCAACAACCCCTTTGTTTCTGGAAAGCTTTAATCCAATTGATGATCCGTATGCTATCAGAAGATACAGACGGGATAGTATTTTCTCAGAAA TGAATGAACTTGATGAAGTGTTGACTCTGATCAGCTGTAAGAACCCTATGGTCAGTTCTGCAACGTTTATGGAAACAGCTCCTTGCATCGATCGATCCAC AAATTCTTCACCTTATTATTACTATTATGCGGTCATTGGTGAAGACCGTGGTGGTGGTGTGGATTTATTTAGCTTGGGAAAGAAGTGCAAAGTGGAGATG ATGACTTTGCTACCAGCGGGTAAGAATTATTCCCACCTCTCATTTCAACAACTTCACCAGCAGTTTGAATATGGGTTTCATCTTTCATGGCACCGCTACA AATGTACTTACTGCTCCGGGACCTGCTACATTGCAGAGATTTTGGGGATCCTGACAACCGAAGAATTCATTCAAAACCACAACCTCATGCCGATCAGGTA TTCTTACTCGAACATCAAGAAGTTCACTGGCGGCTTCAAAGACAAGCTAGGGGAAGGCGGTTTTGGTTCAGTTTACAGGGGTAAGCTCCGGAGTGGCAGT TTTGCAGCTGTAAAGATTCTTGGAAAGTCCACAGCTGGCGGAGTCCAAGACTTTATTAACGAAGTTGCTACCATTGGAACCATTCACCATTCTAATGTGG TGAGACTTATCGGCTTCTGTTCTGAAGGATCGAATCATGCACTCGTTTACGAGTTCATGCCTAATGGTTCCCTTGACAAGTACATCTTTCCCAAGAATCA AGGAGGCGTAACTTTGAGCATTGAACAACTGTATCGCATTTCTATCGGAGTGGCTCGCGGGATCGAATATCTGCATAGCGGGTGTGTCATGCAGATTCTT CATTTCGATATCAAGCCCCACAATGTTCTTCTTGACGACAACTTTAACCCAAAATTGTCAGACTTCGGATTGGCTAGGCTTTATTATGCAGGTGATAGAG TTGCAACTCTAACTGCAGCAAGGGGAACCATCGGGTACATGGCGCCAGAATTGTTCTACAGGAACATCGGAAGCGTCTCTTACAAAGCTGATGTCTATAG CTTTGGAATGTTACTGTTGGACATGGCAGAGAAAAGGCATAACTTGAATGCCGCAACAGATCATTCGAGTCAAGTTTACTTCCCGTTCTGGGTTCATGAT CAGCTTGTGTCTTCCACACAAGGAACTCCTACTATAGCTGGAGATGATGTAACGGAAGAGGAGAATGATCTTGCAAAGAAGATGGTGATTGTAGGGTTGT GGTGCATCCAGACGAATCCTGACAGTCGTCCTCCGATGAACAAAGTGATGGAGATGCTTGAAGGAGAGCTGGAAAGCTTACCACTGCCTCCCAGACCTAT GTTGTATGCTGGAGAGTCTGTAAGAAACGTCGAAGAAGGATCATCGTTAACTTTTATGTCATCACTGTATACACAATGA
AA sequence Show only first row Show all	>Lus10022359 pacid=23171674 polypeptide=Lus10022359 locus=Lus10022359.g ID=Lus10022359.BGIv1.0 annot-version=v1.0 MTSSPFILLLLQLVLQNCQAVADGGNCEPSSCGNIPVIKDPFRLTTDPHICGNYKYSLSCENNTTILYLRNSSTRFYVQAINYNNLTIRLVDGGVYRGNC SSFPTTPLFLESFNPIDDPYAIRRYRRDSIFSEMNELDEVLTLISCKNPMVSSATFMETAPCIDRSTNSSPYYYYYAVIGEDRGGGVDLFSLGKKCKVEM MTLLPAGKNYSHLSFQQLHQQFEYGFHLSWHRYKCTYCSGTCYIAEILGILTTEEFIQNHNLMPIRYSYSNIKKFTGGFKDKLGEGGFGSVYRGKLRSGS FAAVKILGKSTAGGVQDFINEVATIGTIHHSNVVRLIGFCSEGSNHALVYEFMPNGSLDKYIFPKNQGGVTLSIEQLYRISIGVARGIEYLHSGCVMQIL HFDIKPHNVLLDDNFNPKLSDFGLARLYYAGDRVATLTAARGTIGYMAPELFYRNIGSVSYKADVYSFGMLLLDMAEKRHNLNAATDHSSQVYFPFWVHD QLVSSTQGTPTIAGDDVTEEENDLAKKMVIVGLWCIQTNPDSRPPMNKVMEMLEGELESLPLPPRPMLYAGESVRNVEEGSSLTFMSSLYTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	0	1
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	2.2	0.8670
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	3.2	0.8223
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	4.2	0.8313
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	5.5	0.8473
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	5.5	0.8410
AT1G70250			receptor serine/threonine kina...		Lus10008361 [exp]	8.1	0.8161
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	8.2	0.8385
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	8.5	0.8283
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	10.4	0.8274
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	11.0	0.8206

Compare expression of checked genes

Lus10022359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.