Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 1011 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 976 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 906 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 763 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G27020 751 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 740 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G48370 709 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 696 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G45450 239 / 3e-74 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008836 [exp] 1194 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 1028 / 0 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 1004 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 1002 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 910 / 0 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10000879 [exp] 908 / 0 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10013323 [exp] 780 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10032950 [exp] 768 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10034177 [exp] 763 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055224 [exp] 1055 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 897 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.012G024700 [exp] 882 / 0 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 878 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.017G151800 [exp] 746 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 746 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 744 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.001G327300 [exp] 739 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.004G069200 [exp] 735 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 714 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022360 pacid=23171744 polypeptide=Lus10022360 locus=Lus10022360.g ID=Lus10022360.BGIv1.0 annot-version=v1.0 ATGAGCCAAAGGGGGAATAATGGGGAGGAAAGGAAGGAAACAGAGGAAGATGAGAACTGCAGAGACAACAATAACAGTTCGGATGATGTTGTGGAGGAAG AGGATGATGTGAAGAGGATTTCGCCGTGGAACAAACAGCTTACGGTTCGAGGATTAGTGGCCAGTTTAGTCATTGGGGTTATTTACTGTGTGATTGTGAT GAAGCTGAATCTCACTACTGGGTTAGTACCAAACCTCAATGTCTCAGCAGCTTTGCTGGCTTTTGTGTTTGTGAAGTCATGGACTAAACTGCTCAAGAAA GCCGGGTTTATCACGATGCCCTTCACTAGACAGGAGAATACCCTGATTCAGACATGTGCTGTTGCTTGTTACAGCATTGCTGTTGGAGGTGGGTTTGGGT CTTATCTGCTGGCGTTGAACAGCAAGACTTATAGCCAGGCTGGGGTTGATTCGGATGGGAACAATCCGAATAGTGTAAAGGAACCTGGTGTCGGATGGAT GACTAGTTTCCTCTTTGTTAGCAGCTTTGTTGGTCTGCTTGCTTTGGTTCCTCTGAGAAAGATAATGATAATAGACTACAAACTGACTTATCCAAGTGGA ACAGCTACTGCTGTTCTTATCAATGGATTTCATACCCCCAAGGGAAACAAGATGGCCAAGTATGTATCTTCATCTCGTTTCTTTGTCGAATCAAACAGAA AGGGAGTTCCTTGTATTTCAAGCAAACTCATGAAACCCTTCTTGTGCAGGAAGCAAGTCCAGGGATTCTTGAGGTTCTTTTCGGTGAGCTTCGTTTGGGC ATTCTTCCAGTGGTTCTACAGCGGTGGAGACGCATGTGGTTTTGTTCAGTTCCCCACTTTCGGTTTGGCTGCCTGGAAGAATTCGTTTTACTTCGATTTC AGCATGACTTACGTCGGGGCAGGAATGATCTGTTCCCACCTAGTGAATCTGTCGTTGCTCTTTGGCGCGGTGCTCTCTTGGGGTGTAATGTGGCCATTGA TAGGCGATCGCAAAGGAGATTGGTTCTCTTCGTCTCTAAAGGAGAGTAGCATGAAGAGTCTGAATGGTTACAAGGTGTTTATTTCTATTGCTATCATACT AGGGGATGGACTGTACAACTTTCTGAAGATACTTTATTTCACAGCTACCAACATTGTTGCTAGTGTGAAGGCAAGGAGAAATGTTCGAACAGGCCCTGCT GATAGCCAGAATCAGTCTCCACTCGATGATCTTCGAAGAAACGAAGTATTCATCAGGGAAACCATTCCGATCTGGGTAGCTTGCGTAGGCTACGTAGCCT TCTCAATCATATCCATCATCGTGGTCCCACTAATGTTCCCGGAGCTGAAATGGTACTTTGTAGTCGTAGCCTACATTCTAGCTCCCGCCCTCGGTTTCTG CAACGCATATGGTGCCGGTTTAACTGACATGAACATGGCCTACAACTACGGCAAAGTGGCACTCTTTGTGCTTGCAGCCATATCAGGCAAAGAAAACGGC GTTGTTGCAGGACTCGTGGGTTGCGGCCTGATCAAGTCCATTGTCTCAATCTCTTCGGATTTGATGCACGATTTCAAAACCGGACATCTCACACTAACCT CCCCACGATCAATGCTTGTCAGCCAAGCTATCGGAACCGCCATAGGGTGCGTGGTGGCCCCACTGACGTTCTTCCTCTTCTACAAGGCGTTTGATGTCGG GAACCCGGATGGCGAGTACAAGGCTCCTTACGCGCTCATCTACCGAAACATGGCAATTCTAGGAGTGGAAGGGTTTTCGGCGCTACCACAACACTGTCTG CAGCTGTGTTACGGGTTCTTTGGGTTTGCAATTGCGGCGAATTTGTTGAGAGACTTGCTCCCCAAGAAACTAGGTAAATTTGTCCCGTTACCAATGGCGA TGGCGGTTCCATTTCTCGTTGGGGCGTACTTTGCGATAGATATGTGTGTGGGGAGTTTGGCTGTTTTTGTGTGGCACAAGTTGAACAGCAGAAAGGCAGG GTTGATGGTTCCTGCAGTAGCTTCTGGGTTGATATGTGGAGATGGGTTGTGGATTTTGCCTTCTTCAATACTTGCTTTGGCAAAAGTTAAGCCTCCGATA TGTATGGGTTTTGCTAAGAATAGCTAG
AA sequence Show only first row Show all	>Lus10022360 pacid=23171744 polypeptide=Lus10022360 locus=Lus10022360.g ID=Lus10022360.BGIv1.0 annot-version=v1.0 MSQRGNNGEERKETEEDENCRDNNNSSDDVVEEEDDVKRISPWNKQLTVRGLVASLVIGVIYCVIVMKLNLTTGLVPNLNVSAALLAFVFVKSWTKLLKK AGFITMPFTRQENTLIQTCAVACYSIAVGGGFGSYLLALNSKTYSQAGVDSDGNNPNSVKEPGVGWMTSFLFVSSFVGLLALVPLRKIMIIDYKLTYPSG TATAVLINGFHTPKGNKMAKYVSSSRFFVESNRKGVPCISSKLMKPFLCRKQVQGFLRFFSVSFVWAFFQWFYSGGDACGFVQFPTFGLAAWKNSFYFDF SMTYVGAGMICSHLVNLSLLFGAVLSWGVMWPLIGDRKGDWFSSSLKESSMKSLNGYKVFISIAIILGDGLYNFLKILYFTATNIVASVKARRNVRTGPA DSQNQSPLDDLRRNEVFIRETIPIWVACVGYVAFSIISIIVVPLMFPELKWYFVVVAYILAPALGFCNAYGAGLTDMNMAYNYGKVALFVLAAISGKENG VVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYALIYRNMAILGVEGFSALPQHCL QLCYGFFGFAIAANLLRDLLPKKLGKFVPLPMAMAVPFLVGAYFAIDMCVGSLAVFVWHKLNSRKAGLMVPAVASGLICGDGLWILPSSILALAKVKPPI CMGFAKNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	1.0	0.9546
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	2.4	0.9005
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	2.8	0.9168
AT4G33920			Protein phosphatase 2C family ...		Lus10019302 [exp]	2.8	0.8823
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	3.9	0.8722
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	6.6	0.8979
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	8.8	0.8774
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10041133 [exp]	10.8	0.8496
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	11.2	0.8827
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	11.6	0.8875

Compare expression of checked genes

Lus10022360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.