Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24380 248 / 5e-78 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G53550 248 / 6e-78 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT4G24120 216 / 1e-65 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT1G65730 209 / 4e-63 YSL7 YELLOW STRIPE like 7 (.1) AT1G48370 190 / 9e-56 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 188 / 5e-55 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT3G27020 186 / 1e-54 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 184 / 9e-54 YSL4 YELLOW STRIPE like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022358 [exp] 358 / 2e-120 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 306 / 1e-99 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 303 / 3e-99 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 289 / 4e-94 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10012053 [exp] 256 / 9e-84 AT5G53550 568 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 259 / 6e-82 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 258 / 1e-81 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10000879 [exp] 227 / 1e-69 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10033231 [exp] 224 / 8e-69 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024700 [exp] 253 / 2e-80 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.011G055224 [exp] 253 / 7e-80 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 213 / 2e-64 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 213 / 2e-64 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.017G150500 [exp] 201 / 4e-60 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 201 / 4e-60 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 198 / 7e-59 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 196 / 6e-58 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 189 / 1e-55 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 182 / 9e-53 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022365 pacid=23171675 polypeptide=Lus10022365 locus=Lus10022365.g ID=Lus10022365.BGIv1.0 annot-version=v1.0 ATGACAACGATCCAACTGTCCCGGAGGAAGAAATACTTGGGCATCTCTGCTAGACAGGAAGGAAGACGACTGAAAAGAAGAAAGGAACGGATCTGCCAGA CGACATGCAAGGCCATAAACAATAGATTTTACTTTGATTTCAGCATGACTTATGTTGGAGCAGGAATGATTTGCTCCCATCTTGTGAATCTGTCTTTGCT CCTTGGTGCAGTGCTTTCCTGGGGTATAATGTGGCCATTGATCGGCGACCGCAAAGGAGATTGGTACTCTTCATCTCTGCCAGCAAGTAGTATGAAGAGT CTCAATGGTTACAAGGTATTTATTTCTATTGCTCTGATATTGGGGGATGGGTTGTACCAGTTTCTCAAGATAATTTATTTCACTTCTGTCAACATTCTTG CCCGTAGAAGGGCGAGGAAAAATATCCGACCAGCTCCAGATAGTCGGAATCAGGATCCAGTGGATGTCGATCTTCGTAGAAACGAAGTATTTATGAGGGA AAATATTCCTATTTGGGTAGCATGCGTCGGTTACGTAGCACTATCCATCGTATCAGTCATAGTGATCCCTCTAATGTTCCATGAACTGAAATGGTACTAT GTAGTGGTCGTATACATTCTCGCTCCGGCTCTTAGTTTCTGCAATGCATATGGTGCCGGACTAACAGATATGAACATGGGCTACAACTATGGAAAAGTGG CACTCTTTGTGCTTGCTGCTCTTTGTGTTGGGAATGATAATAAAATTGAGGTTTCACAAGTTGAGCCCTTCAAATAA
AA sequence Show only first row Show all	>Lus10022365 pacid=23171675 polypeptide=Lus10022365 locus=Lus10022365.g ID=Lus10022365.BGIv1.0 annot-version=v1.0 MTTIQLSRRKKYLGISARQEGRRLKRRKERICQTTCKAINNRFYFDFSMTYVGAGMICSHLVNLSLLLGAVLSWGIMWPLIGDRKGDWYSSSLPASSMKS LNGYKVFISIALILGDGLYQFLKIIYFTSVNILARRRARKNIRPAPDSRNQDPVDVDLRRNEVFMRENIPIWVACVGYVALSIVSVIVIPLMFHELKWYY VVVVYILAPALSFCNAYGAGLTDMNMGYNYGKVALFVLAALCVGNDNKIEVSQVEPFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022365 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	2.4	0.8340
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	8.2	0.6388
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	9.2	0.7036
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	11.1	0.7885
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	15.8	0.7597
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011879 [exp]	21.0	0.7258
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	27.2	0.7420
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	28.0	0.6454
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	33.4	0.7302
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	34.7	0.7215

Compare expression of checked genes

Lus10022365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.