Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 164 / 4e-48 Protein kinase superfamily protein (.1.2) AT1G66930 164 / 5e-48 Protein kinase superfamily protein (.1) AT1G66980 164 / 4e-47 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G66910 162 / 4e-47 Protein kinase superfamily protein (.1) AT1G67000 162 / 2e-46 Protein kinase superfamily protein (.1) AT1G70250 157 / 5e-45 receptor serine/threonine kinase, putative (.1) AT5G38260 155 / 8e-45 Protein kinase superfamily protein (.1) AT5G38280 155 / 1e-44 PR5K PR5-like receptor kinase (.1) AT5G39030 154 / 7e-44 Protein kinase superfamily protein (.1) AT4G18250 150 / 2e-42 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026759 [exp] 266 / 1e-91 AT1G66930 196 / 5e-59 Protein kinase superfamily protein (.1) Lus10022359 [exp] 270 / 2e-88 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 261 / 3e-88 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 269 / 7e-87 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 262 / 4e-86 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 243 / 4e-79 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10027013 [exp] 221 / 7e-74 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1) Lus10025492 [exp] 223 / 8e-70 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 212 / 6e-66 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122000 [exp] 224 / 2e-73 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.017G034500 [exp] 220 / 5e-72 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.017G009600 [exp] 224 / 7e-70 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.015G018600 [exp] 222 / 8e-70 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125200 [exp] 219 / 8e-70 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 223 / 1e-69 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 221 / 8e-69 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G140800 [exp] 213 / 5e-68 AT5G38280 333 / 1e-107 PR5-like receptor kinase (.1) Potri.017G009000 [exp] 209 / 5e-68 AT5G38280 306 / 3e-99 PR5-like receptor kinase (.1) Potri.007G125000 [exp] 218 / 6e-68 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022367 pacid=23171697 polypeptide=Lus10022367 locus=Lus10022367.g ID=Lus10022367.BGIv1.0 annot-version=v1.0 ATGCCGATCAGGTACTCTTACTCAAACATCAAAAAGTTCACTGGCAGCTTCAAAGACAAGCTAGGCGAAGGCGGTTTCGGTTATGTTTACAAGGGTATGC TCCGGAGTGGCAGTTTTGCAGCTGTAAAGATGCTTGGAAAGTCCACAGCTGGCGGAGTCCAAGACTTTATTAACGAAGTTGCAACCATTGGAACGATTCA CCATGCTAATGTAGTAAGACTTATCGGCTTCTGTTCTAAAGGATCGAAGCGTGCTCTCGTTTACGAGATCATGCCAAACAGTTCCCTTGACAAATACATC TTTCGCAAGCAACAAGGATATGTAACTTTGAGCATTGAACAACTGTATCGCATTTATCTTGGAGTGGCTCGTGGGATTGAATATCTGCACAGCGGGTGTG CCTTGCAGATTCTGCATTTCGACATCAAGCCCCACAATGTTCTTCTTGCGACAACTTTAACCCGAAATTGTCGGACTTCGGGTTGGCTAGGTTTATGCAG GTGA
AA sequence Show only first row Show all	>Lus10022367 pacid=23171697 polypeptide=Lus10022367 locus=Lus10022367.g ID=Lus10022367.BGIv1.0 annot-version=v1.0 MPIRYSYSNIKKFTGSFKDKLGEGGFGYVYKGMLRSGSFAAVKMLGKSTAGGVQDFINEVATIGTIHHANVVRLIGFCSKGSKRALVYEIMPNSSLDKYI FRKQQGYVTLSIEQLYRIYLGVARGIEYLHSGCALQILHFDIKPHNVLLATTLTRNCRTSGWLGLCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	0	1
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	2.4	0.8833
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019829 [exp]	3.2	0.8548
AT5G62140			unknown protein		Lus10038887 [exp]	3.5	0.8739
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10017671 [exp]	3.6	0.8360
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	4.4	0.8159
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	8.5	0.8240
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	9.5	0.8778
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	9.9	0.8478
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	12.8	0.8041
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	13.4	0.8414

Compare expression of checked genes

Lus10022367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.