Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16860 414 / 2e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 401 / 4e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 403 / 1e-124 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 399 / 9e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 395 / 4e-122 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 386 / 6e-119 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 382 / 4e-117 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 372 / 2e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 372 / 3e-114 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 370 / 1e-113 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000213 [exp] 941 / 0 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007772 [exp] 537 / 0 AT4G37170 281 / 6e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022359 [exp] 393 / 2e-124 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10014594 [exp] 396 / 2e-123 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 394 / 5e-123 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 395 / 6e-123 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 391 / 7e-123 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 396 / 4e-122 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 388 / 4e-120 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018800 [exp] 995 / 0 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 420 / 5e-130 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 407 / 4e-127 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 408 / 1e-126 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 406 / 3e-126 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G097000 [exp] 402 / 7e-124 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 399 / 1e-123 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 399 / 2e-123 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 402 / 1e-122 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 394 / 2e-122 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022368 pacid=23171685 polypeptide=Lus10022368 locus=Lus10022368.g ID=Lus10022368.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCACTTTCTTCAATCAGCTCATCATCTTCTTCCACTGCTACTTCTTCTGCCAAAACTTATTATCCTTCCAACCCAACTCCTGGGTTCCAAA TTCCATCCTTCTTGGCCATCAAATCCCATGGGACATTACAAGGAAGATTCCCTCCCTCCCACCACTCTGTTGCAGTTGCAGGAGCCGTTAACGTCGCCAC GCCTGAAGAAGAAAAGCAACAGTCCGTCTACTTCGATTTCTCCTGTTTGAACTCTTGCTCTTCCTTACATCTGGGGAAAATGGTTCACGCTCACGCAATC AAAATCGGCTTCGGCAGCCATGAATCTGTCAACACCAAGTTGCTCCAAATGTACAGGAAGTGCGGTTGTTTGCAGGATGCACAACACGTGTTCGACAAAA TGCCGCAAAGAAACTTGTTCGCTTGGACGGCTATCATCGGTGTCCATCTGGACCACGGACGGTTTGAGGAAGCTATTTCATACTTTGGAGAATTGATGCT TCAAGATGATGTTGCTCTGGATTCTTACGTGTTCTCGACGATTTTCAAGGTTTGTGGCGGCCTTGACATGGTGGAACTCGGGTGGCAGCTACATGCAATG GTGATCAAATTTGGATTTTATCTTGATGTGTCGGTGGGAAATGCTTTGATAGATACTTATGGTAAATGTGGAAGCTTGGAAGACGCCGAGAAACTTTTGG AGATGATGCCTAACCCAGATACTATAACGTGGAACTCCCTTATTACCGCTTGTGCAGCTAACGGAATGGTGCATAAGGCATTAACATTTCTGGAGAAGAT GCAGAATTCTGATAATTTGAAGCCTGATTTGGTTTCTTGGAGTGCCGTAATAGGTGGATTTGCACAGAATGGTTTTGATGAGGAAGCCATAGATTTTCTG TCAAGAATGCAAGCAGAAGGTCTCCAACCGAATTCACGAACCGTGGCAAGTGTTCTTCCAGCATGTGCTAGACTGGAAAGGAGTAGGCTTGGGAGAGAAC TTCACGGCTACATTGTGAGGCATGGTTTTATGGCTAACAGTTATGTGGTGAATGGATTGGTTAATGTATATAGGAGATGCAATGACATGAAAAGTGCGCA TGCAATATTTTCCAAATTTGCAGTGAAAAATAGAGTTTCCTACAACACAATGATTGCTGGCTATTGCGAGACTGGAGTCGTGTCGAAGGCAATGCAACTC TTTGATGAAATGGAGCTTCGTGGAATACGGAGAAGTATAATTTCGTGGAACTCCATGATTGCAGGGTACGTAGATAACTTCCAGTATTCAGAAGGATTGA GTCTGTTCAAAGATTTGATGACATTGGAACGTATTGTACCGGATTCTTTTACGCTAGGAAGTGCCTTGACTGCTTGTGCTAATATGGCTTCTTTGAGTAA GGGTAAGGAGATTCATTCTATTGCCATTGCCAGAGGGTTGCAATCTGATGCATTCGTAGGAGCAGCTCTTGTGGACATGTACTGTGCATGTAAGGATATA GTCGCTGCTCAGTTGGCTTTTGATGAGGTTATTGATAAGGATATCACTACCTGGAATGCTCTGATTTTTGGATACGCTAGCTTAAACGATACTGAGAAAG TACAAGTTTTGCTTCAGCAAATGAAGGAAGATGGTCATGAGCCGAATTCGTACACATGGAATGGTATTCTGGAATGTCATTTACAAGATGGCAACCTAGA CTTAGCGATGCAGTTAGCATCTGAAATGCACAACTCAAAGTTCATCCCGGATGTTTATACAGTTGGAATACTTCTAGGTGATTGCTCAAAGTTGGCCACT TTAGAAAGAGGGAAACAGACTCATGCCCTCTCAATTAGAAGAGGGTACGACTGTAATCTTCATATAGGGGCGGCTCTGGTTGACATGTATGCAAAATGTG GCAGCATCAAGTATGCAATGACAGCTTATAGTCGGATACCGGAGCCAAATTTGGTGTGCCACAACGCAATGCTCACGGCTTATGCCATGCATGGGTATGG AGTGCAAGGAATATCTCTATTCCAAAAAATTCTGGAAACTGGGTACAGACCTGATGAAGTGACTTTCCTATCTGCTCTATGTTCGTGTGTTCATGCTGGA TCGGTAGAGATGGGTCGTATACTGTTCGGAATGATGGAGAACTCCGGCATGAAACCCACATTAAAACATTTTACGGCAATGGTTGATCTACTGAGTCGTT CAGGAAAGCTTGTAGAAGCATATGAGCTTATCAAGAGGATGCCCATGGAAGCTGATTCAGTTTTATGGGGTGCTTTGCTTGGAGGTTGTGTGATTCATGG TAGTATTGAGATAGGAGAGATAGCTGCAAGGAATCTGTTTGAACTGGAACCAGAGGAGAGTGGGAATTATGTGATGTTGGCTAATCTGTATGCTTATTCC AAAAGATGGTCGGATTTGGATAGAACAAGAAATGTTTTGAAAGGGAGAGGGTTGCATAAGAATCCTGGGTGTAGTTGGATTGAAGATAGAGAAGAAAACT GCCTAGCTGCTGCAGATGGGGGTAACTGTGAACCTTCATCTTGTGGGAACATCCCCATCATTAAGCACCCATTTCGACTCACTACTGATCCTCAGAAATG CGGAGATCACAACTATACCCTGTCATGTGAGAGCAATACAACAATATTGTATCTGAGGAACTCTTCTGCAAGATTCTATGTTCAAGCAATCAACTACAAC AACTTGACAATCCGGTTGGTGGATGGTGGTGTGTTTAGACGCAACTGCTCCTCCTTTCCAACTACCCCTTTGTCTCTGGAAAGCTTTAATCCAATTGATG ATCCGTATGCTATCAGAAGATACAGAGGGGCTAGTATTTTCTCAGAAATGAATGAACTTGATGAAGTGTTGACTCTGATCAGCTGTAAGAATCCTATGGT CAGTTCTGCAACGTTTATGGAAGCAGCTCCTTGCATCGATCGATCCACAAATTCTTCACCTTATTATTATTACTATGCGGTCATTGGTGTAGACCGTGGT GGTGGTGTGGATTTATTTAGCTTGGGAAAGAAGTGCAAAGTGGATATGATGACTTTGTTACCAGCGGATGAGAATTATTCCCACCTCTCACTTCAACAAC TTCACCAGCAGTTTGAATATGGGTTTCATCTTTCGTGGCACCGCTACAAATATAATATCCAGAAACAGAGGAAGAAGGGGAGGGAAAGAAGGCCAGAGAG AAGCATTTGA
AA sequence Show only first row Show all	>Lus10022368 pacid=23171685 polypeptide=Lus10022368 locus=Lus10022368.g ID=Lus10022368.BGIv1.0 annot-version=v1.0 MAAPLSSISSSSSSTATSSAKTYYPSNPTPGFQIPSFLAIKSHGTLQGRFPPSHHSVAVAGAVNVATPEEEKQQSVYFDFSCLNSCSSLHLGKMVHAHAI KIGFGSHESVNTKLLQMYRKCGCLQDAQHVFDKMPQRNLFAWTAIIGVHLDHGRFEEAISYFGELMLQDDVALDSYVFSTIFKVCGGLDMVELGWQLHAM VIKFGFYLDVSVGNALIDTYGKCGSLEDAEKLLEMMPNPDTITWNSLITACAANGMVHKALTFLEKMQNSDNLKPDLVSWSAVIGGFAQNGFDEEAIDFL SRMQAEGLQPNSRTVASVLPACARLERSRLGRELHGYIVRHGFMANSYVVNGLVNVYRRCNDMKSAHAIFSKFAVKNRVSYNTMIAGYCETGVVSKAMQL FDEMELRGIRRSIISWNSMIAGYVDNFQYSEGLSLFKDLMTLERIVPDSFTLGSALTACANMASLSKGKEIHSIAIARGLQSDAFVGAALVDMYCACKDI VAAQLAFDEVIDKDITTWNALIFGYASLNDTEKVQVLLQQMKEDGHEPNSYTWNGILECHLQDGNLDLAMQLASEMHNSKFIPDVYTVGILLGDCSKLAT LERGKQTHALSIRRGYDCNLHIGAALVDMYAKCGSIKYAMTAYSRIPEPNLVCHNAMLTAYAMHGYGVQGISLFQKILETGYRPDEVTFLSALCSCVHAG SVEMGRILFGMMENSGMKPTLKHFTAMVDLLSRSGKLVEAYELIKRMPMEADSVLWGALLGGCVIHGSIEIGEIAARNLFELEPEESGNYVMLANLYAYS KRWSDLDRTRNVLKGRGLHKNPGCSWIEDREENCLAAADGGNCEPSSCGNIPIIKHPFRLTTDPQKCGDHNYTLSCESNTTILYLRNSSARFYVQAINYN NLTIRLVDGGVFRRNCSSFPTTPLSLESFNPIDDPYAIRRYRGASIFSEMNELDEVLTLISCKNPMVSSATFMEAAPCIDRSTNSSPYYYYYAVIGVDRG GGVDLFSLGKKCKVDMMTLLPADENYSHLSLQQLHQQFEYGFHLSWHRYKYNIQKQRKKGRERRPERSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	0	1
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	1.0	0.9092
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	1.4	0.9078
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	5.8	0.8596
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	6.3	0.8776
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	7.1	0.8910
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	7.5	0.8626
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	9.2	0.8793
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	10.9	0.8089
AT1G71110			unknown protein		Lus10035272 [exp]	13.4	0.8335
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	14.8	0.8849

Compare expression of checked genes

Lus10022368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.