Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45360 40 / 0.0002 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007767 [exp] 308 / 1e-109 AT5G45360 38 / 0.001 F-box family protein (.1) Lus10037278 [exp] 48 / 5e-07 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10035689 [exp] 48 / 5e-07 AT5G45360 351 / 6e-121 F-box family protein (.1) Lus10039308 [exp] 40 / 0.0003 AT5G52880 211 / 1e-67 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236200 [exp] 45 / 5e-06 AT5G45360 349 / 2e-120 F-box family protein (.1) Potri.002G054500 [exp] 41 / 0.0002 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.008G204800 [exp] 39 / 0.0007 AT4G15563 143 / 6e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10022369 pacid=23171703 polypeptide=Lus10022369 locus=Lus10022369.g ID=Lus10022369.BGIv1.0 annot-version=v1.0 ATGGAAAGGCTACCTGCTGAACTCTGGCTCAAGATCTTCTGCTCCTTGGATCACCCAACTCTTGCTTCCGCCCAGCAAGTGTGCAAGAAATGGAAGGCAA TTGGATCGGAGGATACTTTATGGTCCAATCTCTTCAATCAGAGATGGGGAACGGATCGTTCGGAATTCTACGCCCCGCTTGATTCCGGATCCTGGAAGGA TGTTTATGCTGTTCAAGATCGTTGCGATCGAGTTGGATTGGGGCTGAAGATAATAAGAGAAGGTGGGGACTATTATCTGGTTCACCAGGGCGAAATCCAA CGATATCTGGGTTCTCCCAGACAGAGAAAAGTCACAAATAAGGATGATGGCTCCCTGAAAGCTGAATCGTACATTGCCAATGGTGGTGGGAATGGGATCC TGGACAAGATACTTTTCTTCATTGGAGACCTGGAAGTTGCATCTGCAGATGCCAAACGTGGTCGCCTGACATAA
AA sequence Show only first row Show all	>Lus10022369 pacid=23171703 polypeptide=Lus10022369 locus=Lus10022369.g ID=Lus10022369.BGIv1.0 annot-version=v1.0 MERLPAELWLKIFCSLDHPTLASAQQVCKKWKAIGSEDTLWSNLFNQRWGTDRSEFYAPLDSGSWKDVYAVQDRCDRVGLGLKIIREGGDYYLVHQGEIQ RYLGSPRQRKVTNKDDGSLKAESYIANGGGNGILDKILFFIGDLEVASADAKRGRLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45360			F-box family protein (.1)		Lus10022369 [exp]	0	1
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	1.4	0.9505
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	4.7	0.9449
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	7.1	0.9361
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	9.2	0.9271
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	11.2	0.9360
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	12.0	0.9402
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	13.1	0.9339
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	13.5	0.9439
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	13.9	0.9308
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	16.2	0.9003

Compare expression of checked genes

Lus10022369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.