Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27730 1043 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 1008 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 1001 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G10770 979 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 841 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 824 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G16370 761 / 0 ATOPT3 oligopeptide transporter (.1) AT5G55930 754 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G26590 753 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007770 [exp] 1201 / 0 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10006581 [exp] 990 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10041897 [exp] 979 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10028445 [exp] 827 / 0 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022543 [exp] 784 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 774 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 774 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10039075 [exp] 773 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10022544 [exp] 771 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G019700 [exp] 1097 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 1095 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.003G145500 [exp] 1007 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 971 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.005G150400 [exp] 832 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.009G079500 [exp] 821 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 810 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G004800 [exp] 791 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G006000 [exp] 767 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.016G006500 [exp] 758 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022372 pacid=23171718 polypeptide=Lus10022372 locus=Lus10022372.g ID=Lus10022372.BGIv1.0 annot-version=v1.0 ATGGAGACCGCCGCAGCAGCAGCAATGGAGACAGAGCCATCAAACAACGAAGAACCCAAATGCGTAATCCCGCAGGTGGAAGTAACGGTCCCCAAAACAG ACGACCCGACATTACCAGTGATGACGTTCAGGATGTGGGTTTTGGGGATAGCGTCATGTGTCCTCTTGTCGTTTGCCAACCAGTTTTTCTGGTACAGGAC ACAACCTCTGTCCATCTCTGCCATCTCTGCCCAGATTGCTGTCGTCCCCATTGGACATCTCCTCGCCAAGGTCCTCCCTACTCGAGCCTTTTTCGCAGGG ACAAAGATGGAGTTTACGTTGAATCCGGGTCCGTTCAACATCAAGGAACATGTGCTCATCACCATCTTTGCTAACTGTGGCGCTGGGACTGTGTACGCTA CTCATATTCTGAGTGCTGTTAAGCTGTATTACAAGCGGCAGATGACCTTCATTCCTGCCTTGCTCGTCATGATCACCACTCAGGTTTTAGGGTTTGGGTG GGCTGGACTTTTCAGGAGGTACCTAGTGGAGGCAGAGGAAATGTGGTGGCCTAGCATTTTAGTGCAGGTCTCTCTGTTCAGGGCACTGCATGAGAAAGTG AAGAGGCCAAAAGGAGGAGTAAGCAGGACCCAATTCTTCCTCATAATCCTAGTCTGCAGCTTCTGCTACTACATTTTACCAGGCTACCTCTTCACCATGC TAACCACCTTCTCATGGGTTTGTTGGATGTTCCCACACTCCGTTCTCGGACACCAGCTCGGTTCGGGGATGAGTGGACTGGGGATCGGATCTTTCGGTTT GGATTGGTCTACCATCGCATCTTACCTCGGAAGCCCACTTGCTAGCCCTTGGTTTGCAACTGCAAACATTGCTGTCGGGTTCTTCCTTGTTATGTATGTT ATGACACCTCTGACTTACTGGTCTAACACTTACAAGGCAAAGACGTTTCCTTTGTACTCAAGCAAGTTGTTTTTGTCGAACGGATCACGCTATGACATCC TCAGCATTGTTGATTCGAAGTTCCATCTTGATAGAGAAGTTTACTCCCAGTTTGGCCCTGTAAATCTCAGCACTTTCTTTGCCATGACCTATGGTATTGG ATTCGCTACGTTGGCTGCTACCATTGTTCATGTTCTCCTGTTCAATGGAAGGGACTTGTGGAAGCAGAGCAAGAGGGCATTTTCTGAGAAAAGGGGAATG GACATACACACAAGGCTAATGAGGAGATACAAGCAGGTTCCATCATGGTGGTTTGTTGTGATTCTGGTGGCGAACATTGCACTTATAATCTTTGCCTGTG AGTATTACAATGCAACTCTTCAGCTGAAATGGTGGGGAGTTCTGCTAGCTTGTGCTCTAGCCATTTTCTTCACTCTCCCCATTGGAATCATCAATGCCAC CACCAACCAGCAACCTGGGTTGAACGTTATTACAGAGTATATCATTGGTTATCTATATCCTGAACGTCCAGTTGCAAACATCTGCTTCAAAGTGTATGGC TACATCAGTATGGCTCAAGCTCTAACCTTTGTTGGAGATTTCAAGCTTGGTCACTACATGAAGATTCCACCTAGATCAATGTTCACTGTACAGGTGGTGG GAACAGTGCTATCAGTGATAGTGTACCTAGTAACAGCATGGTGGATGATGGGATCAATCCCAAACCTATGCGACCAAGAGAAGCTCCCATCCGACAGTCC ATGGACATGTCCCATGGACACGGTCTTCTTCGACGCCTCGGTGATATGGGGGCTGGTGGGACCGCGAAGGATTTTCGGGGACCTTGGTGAGTACGGCAAC GTCAACTGGTTCTTCCTGGGAGGAGCCGTGGCTCCGTTTCTGGTGTGGCTCGCTCACAAGGCTTTCCCTAGTCAGGGGCATTGGATCAGGTACATCAACA TGCCTGTCTTGCTCGGTGCCACTTCCATGATGCCGCCGGCTTCCGCGGTGAACTTCACGAGCTGGATCGCAGTGGGGTTTTTGTCGGGGTTCGTCGTGTT TAGATGGAGGCCAAAGTGGTGGAATCGGTACAATTACGTGATGTCTGGTGGGCTTGATGCCGGCACTGCTTTCATGACGATACTGATTTTCTTCTGCTTA CAGAATCGGAATGTGGGGATTGATTGGTGGGGGACGAGACCTGATGGGTGTCCCTTGGCACACTGCCCTACTGCTCCCGGTGTCGCAATCGACGGATGTC CAATTGCCTGA
AA sequence Show only first row Show all	>Lus10022372 pacid=23171718 polypeptide=Lus10022372 locus=Lus10022372.g ID=Lus10022372.BGIv1.0 annot-version=v1.0 METAAAAAMETEPSNNEEPKCVIPQVEVTVPKTDDPTLPVMTFRMWVLGIASCVLLSFANQFFWYRTQPLSISAISAQIAVVPIGHLLAKVLPTRAFFAG TKMEFTLNPGPFNIKEHVLITIFANCGAGTVYATHILSAVKLYYKRQMTFIPALLVMITTQVLGFGWAGLFRRYLVEAEEMWWPSILVQVSLFRALHEKV KRPKGGVSRTQFFLIILVCSFCYYILPGYLFTMLTTFSWVCWMFPHSVLGHQLGSGMSGLGIGSFGLDWSTIASYLGSPLASPWFATANIAVGFFLVMYV MTPLTYWSNTYKAKTFPLYSSKLFLSNGSRYDILSIVDSKFHLDREVYSQFGPVNLSTFFAMTYGIGFATLAATIVHVLLFNGRDLWKQSKRAFSEKRGM DIHTRLMRRYKQVPSWWFVVILVANIALIIFACEYYNATLQLKWWGVLLACALAIFFTLPIGIINATTNQQPGLNVITEYIIGYLYPERPVANICFKVYG YISMAQALTFVGDFKLGHYMKIPPRSMFTVQVVGTVLSVIVYLVTAWWMMGSIPNLCDQEKLPSDSPWTCPMDTVFFDASVIWGLVGPRRIFGDLGEYGN VNWFFLGGAVAPFLVWLAHKAFPSQGHWIRYINMPVLLGATSMMPPASAVNFTSWIAVGFLSGFVVFRWRPKWWNRYNYVMSGGLDAGTAFMTILIFFCL QNRNVGIDWWGTRPDGCPLAHCPTAPGVAIDGCPIA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	0	1
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	9.6	0.9158
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	10.0	0.9022
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Lus10023089 [exp]	10.4	0.8891
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	16.4	0.9127
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	17.7	0.9145
AT4G10265			Wound-responsive family protei...		Lus10039751 [exp]	23.2	0.9080
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	23.8	0.9093
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	24.0	0.9033
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10008423 [exp]	25.1	0.8872
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	25.9	0.9011

Compare expression of checked genes

Lus10022372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.