Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37590 106 / 2e-27 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT2G28810 103 / 2e-26 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 103 / 2e-26 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G60200 100 / 7e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G65590 101 / 1e-25 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT4G38000 99 / 3e-25 DOF AtDof4,7 DNA binding with one finger 4.7 (.1) AT5G02460 101 / 4e-25 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 96 / 9e-25 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT1G07640 99 / 1e-24 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G45610 97 / 1e-24 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007774 [exp] 234 / 2e-77 AT5G60200 124 / 6e-34 TARGET OF MONOPTEROS 6 (.1) Lus10042114 [exp] 99 / 1e-26 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10035955 [exp] 104 / 2e-26 AT5G65590 196 / 4e-60 Dof-type zinc finger DNA-binding family protein (.1) Lus10029458 [exp] 103 / 3e-26 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10025707 [exp] 103 / 3e-26 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10005956 [exp] 102 / 7e-26 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 103 / 8e-26 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 102 / 2e-25 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10033218 [exp] 101 / 2e-25 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144500 [exp] 106 / 1e-27 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 104 / 5e-27 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 104 / 1e-26 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 103 / 3e-26 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.009G029500 [exp] 103 / 3e-26 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G084200 [exp] 102 / 5e-26 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.001G238400 [exp] 102 / 6e-26 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.005G149100 [exp] 102 / 6e-26 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 101 / 1e-25 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.008G055100 [exp] 101 / 2e-25 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10022373 pacid=23171647 polypeptide=Lus10022373 locus=Lus10022373.g ID=Lus10022373.BGIv1.0 annot-version=v1.0 ATGGATCCTCCTCCTCAGTGGCAACAACAACAGGGGATTGCTGTTGGTGGTGAAGAAGAAGCCCTTTCATACTCCGCCGCTACTCCGCCGCCACCGCCTC ATGCAACGGCAGCGGCGCAAAGCAGGAAAGGAGAAGCCGTAATCAAGTGCCCGCGTTGCCAATCGGGCGACACCAAGTTCTGCTACTACAACAACTACAG CTTGACCCAGCCCAGATACTTCTGCAAGACCTGCCGTCGCTACTGGACTCGAGGCGGCGCCCTCCGCGATGTCCCCATCGGGGGCGGCTCCCGTAAGTCC GCCCCCGCCAAACGCTCTTCTTCTTCCGCCGATCGCTCCCCTCCTCCTCACGCCGCTTCAAAGAAGAAGCTTGTCACGACCACGGCTGACAAGGCGGGAC AAGAACTGAACTTGGCTTACCATCCGCCGCCTCGGGCAGCATACAAGTTCAGTGAAGTGGTTCATCAATTCCTGAACCCTAACTACTACTCTATGGTCCC ACTCCTTCCTTATCATAATAATTGTGGCGGTGGAAGAGGAGATGAGTTGGGAATGATGAAACCCCTGCCGCCGCCGCCGCCGCCGCCGCCAGCATTTTGT TGTCCGGCTTTCCATGGTGGTGGCTTTGAGATTTGA
AA sequence Show only first row Show all	>Lus10022373 pacid=23171647 polypeptide=Lus10022373 locus=Lus10022373.g ID=Lus10022373.BGIv1.0 annot-version=v1.0 MDPPPQWQQQQGIAVGGEEEALSYSAATPPPPPHATAAAQSRKGEAVIKCPRCQSGDTKFCYYNNYSLTQPRYFCKTCRRYWTRGGALRDVPIGGGSRKS APAKRSSSSADRSPPPHAASKKKLVTTTADKAGQELNLAYHPPPRAAYKFSEVVHQFLNPNYYSMVPLLPYHNNCGGGRGDELGMMKPLPPPPPPPPAFC CPAFHGGGFEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	2.0	0.8705
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	2.4	0.8637
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	7.2	0.8253
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	7.5	0.8496
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	8.0	0.8344
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	8.4	0.8310
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	9.9	0.8276
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	11.1	0.8041
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	12.3	0.8163
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	12.6	0.8471

Compare expression of checked genes

Lus10022373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.