Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78060 1063 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 807 / 0 Glycosyl hydrolase family protein (.1) AT1G02640 761 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G09730 760 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G64570 759 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT3G19620 756 / 0 Glycosyl hydrolase family protein (.1) AT5G49360 731 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G09700 456 / 1e-152 Glycosyl hydrolase family protein (.1) AT3G47050 169 / 3e-44 Glycosyl hydrolase family protein (.1.2) AT3G47000 166 / 2e-43 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007775 [exp] 1083 / 0 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 1047 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 761 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10020966 [exp] 752 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10010015 [exp] 747 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10016858 [exp] 645 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019240 [exp] 304 / 4e-94 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 159 / 1e-40 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10037728 [exp] 140 / 2e-38 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094000 [exp] 1221 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 1198 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 1135 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 1043 / 0 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G089100 [exp] 784 / 0 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G197200 [exp] 781 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 774 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.001G206800 [exp] 771 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.010G141400 [exp] 764 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.001G294700 [exp] 759 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022374 pacid=23171741 polypeptide=Lus10022374 locus=Lus10022374.g ID=Lus10022374.BGIv1.0 annot-version=v1.0 ATGGATTCTACTAAGCTTATCTTCTTCATCCTCCTCTTCCTCCTCCAACCTTTCTCTTCCTTCCAACAGCAGCCTGCATTTTCATGCGGACCATCAACTT CCTCCTCCGTCCTGCCATTCTGCAACCCAAAGCTACCCATTAGGGAAAGAGCCATAGACCTGGTATCCAGGCTCACTCTGGACGAGAAGATCTCCCAACT CGTCAACTCAGCAGCAGCCATTCCCAGGCTCGACATCCCAGCCTACGAGTGGTGGTCCGAGGCCCTACACGGCGTGGCTTTCGCGCGTGGCATTCACTTC AACGGCACCATTTCCAAAGCCACCAGCTTCCCTCAAGTCATCCTCACCGCCGCTTCCTTCGACGCCTATCAGTGGTACCGTATTGGTCAGGTGGTTGGGA AAGAGGCGAGGGCGCTGTACAATTCAGGGCAGGCCTCAGGGCTGACGTTTTGGGCACCAAACATTAACATATTTAGGGACCCTAGATGGGGGAGAGGGCA AGAAACCCCTGGGGAGGATCCTTTTATCACTGGCAAGTATGCAGTTTCTTTTGTGAGAGGAGTTCAAGGTGACTCTTTTCATGGTGATGCTAAGCTCAAG GGTCATCTCCAGGCTTCTGCTTGTTGCAAGCATTTCACTGCTTATGATTTGGACAACTGGAAGGGCGTCAATCGCTTCCTCTTTGATGCTCGAGTGACTC AACAAGATATGGCGGACACTTATCAGCCACCATTCCAGAGCTGCGTCAAACAAGGAAGAGCCAGTGGGATAATGTGTGCATACAACAGAGTTAATGGGGT TCCAAGCTGTGCTGATTACAATCTTCTTTCCAAAACTGTCAGAGCCGAATGGGGTTTTCATGGGTACATAACATCTGACTGTGATGCTGTTTCTATCATT CATGATGCTCAAGGCTATGCTAAACAGCCAGAGGATGCTGTTGCCGACGTTCTTAAAGCAGGGATGGACATGGACTGTGGATTATACTTGCAGCAGCACA GCAAAACAGCAGTTGAGCAAGGGAAACTTCCAGTATCACAAATCGATAGAGCTCTCCACAACCTCTTCGCGTTGAGAATGAGGTTAGGACTTTTCAATGG GGATCCAAAGGAACAAGTTTTCGGCAACATTGGTCCCGACCAAGTTTGTTCTCAAGAGCATCAGATGCTGGCACTTGAAGTTGCTCGCAATGGCATTGTT CTTTTGAAGAACTCGGGGAGACTTCTCCCTCTTCACAAGTCTGAATCCGGGTCCATTGCTGTGATCGGGCCGAATGCAGATCCTGGTCGAACTCTTCTTG GAAACTATGCAGGTCCTCCATGCACATTGATCACACCATTGCAGGGACTTCAGGCTTATGTCAAGGATACCACTTACATCCAGGGCTGTGAAAATGTTCA GTGCTCGTCTGCTGATATTGAACAAGCAGTGAAAACAGCACAAGGTGCGGATCATGTGATACTTGTAATGGGATTGGATCAAACACAAGAGAGAGAAGAG CTCGATCGTGTGGATTTAATACTTCCTGGGATGCAACAGGAACTCATAACCAGGGTCGCCAGAGCTGCAAAGAATCCTGTTGTTCTCGTGCTCCTTTCTG GAGGTCCTATTGATGTATCTTTTGCCAAGTACGATAACAAAATAGGAAGCATTTTGTGGGCTGGTTACCCAGGTCAAGCTGGCGGGACTGCATTGGCAGA AATTATCTTCGGTGATCACAATCCAGGTGGAAGGCTACCAGTTACTTGGTATCCTCAAGAGTTCGTTAAGGTACCGATGACAGATATGAGGATGCGACCC GAATCATCTTCTAGCTATCCAGGCCGAACATACAGATTCTACAAAGGCCGGAGCGTGTTCGAGTTTGGTCATGGCCTCAGCTACTCCAAGTACTCGTACG AGCTGAAGCACGTATCGCAAGACAAACTTTACTTAAACCAGTCGTCCTCCATGTCAGTGCACACAGTTGACAAATCGGATTCAGTTCGGTCGATGCTAGT GTCTAACTTAGGGGCAGAGTTCTGCGAGCAAAGCGAATTTGCGGTGAGAGTTGAGGTGGAAAACCAGGGTGAGATGGCTGGGAAGCATCCTGTGCTGCTG TTTGCAAGGCAGGGAAAGCATGGAAATGGGAGGCCAAGGAAACAGCTGGTTGGATTCAAGAGTGTGGTACTAAGTGCAGGAGAAAAGGGTGAGGTTGAGT TCCTAGTTAGCCCTTGTGAGCATCTCAGCAGAGCTAATGAAGATGGTTTGATGGTCATTGAAGAAGGCACACATTTCTTGGCTGTAGGAGGTGACCAACA CCCAATTGATGTGATGTTGTGA
AA sequence Show only first row Show all	>Lus10022374 pacid=23171741 polypeptide=Lus10022374 locus=Lus10022374.g ID=Lus10022374.BGIv1.0 annot-version=v1.0 MDSTKLIFFILLFLLQPFSSFQQQPAFSCGPSTSSSVLPFCNPKLPIRERAIDLVSRLTLDEKISQLVNSAAAIPRLDIPAYEWWSEALHGVAFARGIHF NGTISKATSFPQVILTAASFDAYQWYRIGQVVGKEARALYNSGQASGLTFWAPNINIFRDPRWGRGQETPGEDPFITGKYAVSFVRGVQGDSFHGDAKLK GHLQASACCKHFTAYDLDNWKGVNRFLFDARVTQQDMADTYQPPFQSCVKQGRASGIMCAYNRVNGVPSCADYNLLSKTVRAEWGFHGYITSDCDAVSII HDAQGYAKQPEDAVADVLKAGMDMDCGLYLQQHSKTAVEQGKLPVSQIDRALHNLFALRMRLGLFNGDPKEQVFGNIGPDQVCSQEHQMLALEVARNGIV LLKNSGRLLPLHKSESGSIAVIGPNADPGRTLLGNYAGPPCTLITPLQGLQAYVKDTTYIQGCENVQCSSADIEQAVKTAQGADHVILVMGLDQTQEREE LDRVDLILPGMQQELITRVARAAKNPVVLVLLSGGPIDVSFAKYDNKIGSILWAGYPGQAGGTALAEIIFGDHNPGGRLPVTWYPQEFVKVPMTDMRMRP ESSSSYPGRTYRFYKGRSVFEFGHGLSYSKYSYELKHVSQDKLYLNQSSSMSVHTVDKSDSVRSMLVSNLGAEFCEQSEFAVRVEVENQGEMAGKHPVLL FARQGKHGNGRPRKQLVGFKSVVLSAGEKGEVEFLVSPCEHLSRANEDGLMVIEEGTHFLAVGGDQHPIDVML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	1.0	0.9304
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	2.0	0.9201
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	2.4	0.9132
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	4.0	0.9004
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	4.2	0.8678
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	7.9	0.8667
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10022976 [exp]	11.2	0.8394
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031298 [exp]	13.3	0.8603
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	13.7	0.8376
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	15.7	0.8661

Compare expression of checked genes

Lus10022374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.