Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24340 526 / 0 3'-5' exonuclease domain-containing protein (.1) AT1G56310 82 / 2e-16 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32415 57 / 4e-08 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G35910 48 / 2e-05 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 46 / 7e-05 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010930 [exp] 82 / 4e-16 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031403 [exp] 55 / 5e-08 AT1G56310 305 / 2e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031563 [exp] 46 / 0.0001 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10015114 [exp] 45 / 0.0002 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009500 [exp] 622 / 0 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1) Potri.005G020000 [exp] 86 / 1e-17 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.019G038701 [exp] 47 / 4e-05 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.013G062800 [exp] 47 / 5e-05 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 45 / 0.0001 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease CL0280 [flax] [poplar] PIN PF01927 [flax] [poplar] Mut7-C Mut7-C RNAse domain
Representative CDS sequence Show only first row Show all	>Lus10022376 pacid=23171775 polypeptide=Lus10022376 locus=Lus10022376.g ID=Lus10022376.BGIv1.0 annot-version=v1.0 ATGGAACCCATGAACCGACTCCCTCCAACTCACATTGTCGCCTCAAACGACTCCCCCGAGTTCGCCCGCCTCACTCAGGTCCTGGCTCGCTCTGCAATCA TCGGGCTAGATGCCGAGTGGAAACCACTCAAGACCCAACAATCCACCTTCCCAAATGTGTCCCTCCTCCAACTCGCTTGTCAACTCAGCCCTGAGGAAAA TGACTCGGAGGTTTTCCTGCTTGACCTCGACTCAATTCCCTTGCCTTCCATTTGGGAACTGTTGAAGGAATTATTCATTTCTCCCGATATATTGAAGCTC GGTTTTCGATTCAAGCAAGATTTGGCTTACTTGTCTTCGACGTTCTGCTCCCGCGGATGTGATCCTGGGTTTGACAAGGTGGAGCCGTATTTGGACATCA CAAGTTTGTATCATTTTCTACAACCAAAACTACCAGGAATGAAGGTGCCAAATGAAACAAAGAGTCTAGCAACTATATGCAAAGAGATATTGGGGATTTC TCTTTCAAAGGAGCTTCAATGTAGTGATTGGTCATGTCGACCTCTTACGGAAGAACAGAAAACCTATGCTGCTGCAGATGCACATTGCTTGCTTCAAGTT TTTTCTACTTTCAAGTCCAAAGTCATGGAAAAAGGAAGTTCTTCTCGAATTACAAATGGGCATATACCATATGTTGGGTTAAAAGAAGTTCTTCAACTAG ATGAAAGCGGTAATAAACACATGAGGGTTAAAAGTTGTGAAGCTTTGGCAATAGTTAGGGCTACTGTTTCTTCTGTACATTGCCAAATAATAATGGGAGA TGGAGTAATTTCCAGGACGACACTGATAAATACGATGCCAATGGCTGAATCACTCCTCGAGATAGTAAAGAAACATGGTGAAAAGATCTTGTTGAAAGCT TCTGACAGAAAACCAAGATCTTCTAAGAAAAGAGGAAAGAGAAAACCTTCCACAACTCAAGTTAACAGAGAAAATTGGATAGATGATGGTAGCTGGGAAG GTAGCACACCATGGGATTTATCTGAAGGCGGTGATGGAAGCCCCAAGTTCCTGTGTGATGTTATGATTGAAGGCTTGGCGAAACATCTTCGTTGTGTGGG AATCGATGCTGCAATTCCATTCTCTAAAAAACCTGAACCCAGGGAATTGATAGATCAAGCATACAAAGAAAAAAGAGTGCTCTTGACTCGGGATGCTAAG TTATTGAGGCATCGGCACTTGATAAAGAACCATATTTACAGAGTGAAGAGTCTTGTTAAAAATCAGCAACTACTTGAGGTGATCGAAATCTTTAATTTAA AGATTAGCGAAGATCGGCTAATGTCAAGGTGCACCAAGTGCAATGGGAGGTTTATTCAAAAGCCTCTAACAACCGAAGAGGCAGGTGGAGGTGGAAAAGG GGGTTGTAAAAAACAGGATTGGCAAAGTGCGGCTATGCTCAGGGCGCACAAGTGCATGGAATGCAACCAACTTTACTGGGAGGTTCAGCTTCTGTGGCTT AGTTGTTCCTTATCTCTGTTTGCTTCCAAGTTAAGTGTCCTTGCGCATTTGTGGTTAAACTGTGATGTTGGTGCAGGGAACCCAATATCACAATGCAGTT CAGAAATTTGTGGACATTTGCAAGTTGAATGA
AA sequence Show only first row Show all	>Lus10022376 pacid=23171775 polypeptide=Lus10022376 locus=Lus10022376.g ID=Lus10022376.BGIv1.0 annot-version=v1.0 MEPMNRLPPTHIVASNDSPEFARLTQVLARSAIIGLDAEWKPLKTQQSTFPNVSLLQLACQLSPEENDSEVFLLDLDSIPLPSIWELLKELFISPDILKL GFRFKQDLAYLSSTFCSRGCDPGFDKVEPYLDITSLYHFLQPKLPGMKVPNETKSLATICKEILGISLSKELQCSDWSCRPLTEEQKTYAAADAHCLLQV FSTFKSKVMEKGSSSRITNGHIPYVGLKEVLQLDESGNKHMRVKSCEALAIVRATVSSVHCQIIMGDGVISRTTLINTMPMAESLLEIVKKHGEKILLKA SDRKPRSSKKRGKRKPSTTQVNRENWIDDGSWEGSTPWDLSEGGDGSPKFLCDVMIEGLAKHLRCVGIDAAIPFSKKPEPRELIDQAYKEKRVLLTRDAK LLRHRHLIKNHIYRVKSLVKNQQLLEVIEIFNLKISEDRLMSRCTKCNGRFIQKPLTTEEAGGGGKGGCKKQDWQSAAMLRAHKCMECNQLYWEVQLLWL SCSLSLFASKLSVLAHLWLNCDVGAGNPISQCSSEICGHLQVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24340			3'-5' exonuclease domain-conta...		Lus10022376 [exp]	0	1
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	3.2	0.8579
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	3.5	0.8190
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	13.2	0.8271
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	17.6	0.8197
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	19.9	0.8304
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	20.0	0.8207
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	25.2	0.8130
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	29.4	0.8133
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	31.6	0.8174
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	33.8	0.8120

Compare expression of checked genes

Lus10022376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.