Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24320 516 / 1e-175 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 490 / 8e-166 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 376 / 5e-121 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 362 / 3e-116 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G15470 291 / 3e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 289 / 7e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 237 / 2e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 234 / 4e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 209 / 3e-57 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 70 / 1e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007783 [exp] 679 / 0 AT5G24320 246 / 3e-73 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 480 / 9e-161 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 471 / 4e-157 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 333 / 7e-105 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 327 / 6e-103 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 261 / 3e-78 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 259 / 1e-77 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 238 / 2e-67 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 235 / 4e-66 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009700 [exp] 709 / 0 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 656 / 0 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 490 / 1e-164 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 483 / 8e-162 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 480 / 6e-161 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 355 / 9e-114 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 355 / 2e-113 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 309 / 2e-93 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 297 / 9e-89 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 237 / 3e-67 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10022377 pacid=23171758 polypeptide=Lus10022377 locus=Lus10022377.g ID=Lus10022377.BGIv1.0 annot-version=v1.0 ATGTGTAGCTTGAGCGAAGAAGAAGTTGGGTTCTTTGATGCAGCTGACGACATTGCATCGACAAATGACACATTGGATAATAATTCAGCTGCCACTAGTC CTCATTATGATCTCTGGGTTGACGTCCCCAAAAGTGTGGAGGAAAGGCGAAACAGGTTCTTCAAATGGATGGAGGTAGGTTCATCTCCAAGTCGTCCTGG AGAGGATTTGATGGAAAGTGGTGGGGTTAGTAGTAGAGTTACTGAAAGCAGTGGTGCTGTGTTGAGAAACGAACCCGACTTTTGCTCGACAAGGTCTCCG AAGCTAAGTTGGTCCTACGATAGTTCAGGCGAAGAGTTCTTGGACAGAGATGGTGGAGAGATGACATCTAATGTAGAGTATCAACATGGGAGGATTAGTG AAAGTCGTAGACTTTACTCATGTCCAGCTCGAACTTGGGAGTCTATGAATATTTCTGGCTCATTATCCCCTTCAGTTCAGCAAAATGCCACAAAGACGGG TAAAAAACGGTGGCTGAGCAGATTGCGGTCCATGGCGTGTGCTGTAGATGTCAGAACCGATGCCAAAAGGTTAAACCACGCGGTGGATGATTCGCTTTTG TACAGAGTACACAGGGTGAAAGTTCGTCAATCGGGGAAGCGGATAAAGGAGCTTTCAGCTCTGTACAGTGGGCAAGATATCCAAGCTCACAGGGGCTCCA TTTTGACAATGAAGTTCAGTCCAGATGGGCATTACCTGGCTAGTGCTGGCGAAGATGGAGTGGTGCGTGTGTGGCAAATCGTTGAGGACGATCGATCAAT TGAACGTGACATTCCAGAAATAGATCCTTCCTGTGTTTACTTCACCGTGAACCATTTGTCTGAGCTGAAACCACTCATCAGTAACAGAGAAAAGACGGCT AAATTGAGGAGTCTGAGGAAAACATCAGATTCATCTTGTGTTATTTTCCCTCCCAAGGTTTTCCGAATAATGGAGGAACCATTGCATGAGTTCCTTGGAC ACGGTGGTGATATCTTGGACATATCATGGTCCAAGGATAATCATTTACTGTCGGCATCGGTTGACAAAACTGTCCGTCTCTGGCAAGTAGGATGCAATCA ATGCCTTGGAATCTACCCACATAGCAACTATGTTACTTGTGTTCATTTCAACCCCGCCGATGATCAATTTTCCATCTTTCTGATTGAAAGTTTCTTCCTG AATATGCAGGGATTGGTGGTTGGCTCCATGACAGGCACTTGCCGCTTTTATAGCCGGTCAGGTAGTCAATTGCAGTTAGATGCCCAAGTAAGTTTAAGCA ACAAAAAGAAGTCGCCTGGAAAAAGAGTAACTGGCTTTGAGTTTTCCCCACAAGATTCGAGCAAAGTGATGGTGACCTGTGCTGATTCGCACGTTAGAAT ATTGAAAGGGCTTCACATAATTGCCAAATACAAGGGCTTGAAGAACACTGCAAACTACGTAACTGCTCGTTTTACTTCGGACGGAAGGCATATAATATCA GCCTGTGAAGATTCCAATGTGTACATGTGGGATAGTTATGGCCTAGAAGAATCGTCATCATTCAATGCTAAGAACATCAAGTCTTGTGAGAGGTTCTCTG TTGATGCATCTGTTTCATTACCTTGGTCTGGCTTCAAGCATTTTGAGAACTCAGAAAACGGGCATGGTGTGCCGCCTTTCCCTCGTGATAGTAGTACCAT AGGGACAACCTTTCCTTTTTCCTCTTCACCTGCCAGTTTCAATTTGGGTCAAGAATACTTCCTCGAGTCTTACCCCAAGGGTTCTGCAACTTGGCCAGAG GAAAAGCTTCCAAGAACAAGCTCGTCAACCTCCTCGCCATTGTCGATCCATAAATCTCAGTACAAGTTTCTGAAAACATCATGTCAGAGCAGTGCAGGTT CTCATGCATGGGGTCTGGTCATTGTCACAGCAGGCTGGGACGGTAGAATTCGATCGTTCCATAATTACGGTCTGCCCGTTCCTGTCTAA
AA sequence Show only first row Show all	>Lus10022377 pacid=23171758 polypeptide=Lus10022377 locus=Lus10022377.g ID=Lus10022377.BGIv1.0 annot-version=v1.0 MCSLSEEEVGFFDAADDIASTNDTLDNNSAATSPHYDLWVDVPKSVEERRNRFFKWMEVGSSPSRPGEDLMESGGVSSRVTESSGAVLRNEPDFCSTRSP KLSWSYDSSGEEFLDRDGGEMTSNVEYQHGRISESRRLYSCPARTWESMNISGSLSPSVQQNATKTGKKRWLSRLRSMACAVDVRTDAKRLNHAVDDSLL YRVHRVKVRQSGKRIKELSALYSGQDIQAHRGSILTMKFSPDGHYLASAGEDGVVRVWQIVEDDRSIERDIPEIDPSCVYFTVNHLSELKPLISNREKTA KLRSLRKTSDSSCVIFPPKVFRIMEEPLHEFLGHGGDILDISWSKDNHLLSASVDKTVRLWQVGCNQCLGIYPHSNYVTCVHFNPADDQFSIFLIESFFL NMQGLVVGSMTGTCRFYSRSGSQLQLDAQVSLSNKKKSPGKRVTGFEFSPQDSSKVMVTCADSHVRILKGLHIIAKYKGLKNTANYVTARFTSDGRHIIS ACEDSNVYMWDSYGLEESSSFNAKNIKSCERFSVDASVSLPWSGFKHFENSENGHGVPPFPRDSSTIGTTFPFSSSPASFNLGQEYFLESYPKGSATWPE EKLPRTSSSTSSPLSIHKSQYKFLKTSCQSSAGSHAWGLVIVTAGWDGRIRSFHNYGLPVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	7.3	0.7760
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	7.4	0.7537
					Lus10005748 [exp]	8.7	0.7558
AT4G19510			Disease resistance protein (TI...		Lus10024149 [exp]	11.0	0.6605
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	11.4	0.7584
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	12.2	0.7593
AT1G73040			Mannose-binding lectin superfa...		Lus10006866 [exp]	15.6	0.6900
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10041727 [exp]	15.9	0.6707
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	18.8	0.6680
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	20.5	0.7537

Compare expression of checked genes

Lus10022377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.