Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23710 290 / 1e-97 AtTic22-III translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) AT4G33350 152 / 2e-44 AtTic22-IV translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007784 [exp] 434 / 4e-155 AT3G23710 257 / 2e-85 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Lus10006487 [exp] 146 / 3e-42 AT4G33350 358 / 2e-125 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Lus10009759 [exp] 140 / 2e-39 AT4G33350 355 / 3e-124 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236000 [exp] 333 / 7e-115 AT3G23710 351 / 7e-122 translocon at the inner envelope membrane of chloroplasts 22-III, Tic22-like family protein (.1) Potri.014G030000 [exp] 158 / 1e-46 AT4G33350 359 / 5e-126 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2) Potri.002G126800 [exp] 157 / 3e-46 AT4G33350 374 / 7e-132 translocon at the inner envelope membrane of chloroplasts 22-IV, Tic22-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [flax] [poplar] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Lus10022378 pacid=23171689 polypeptide=Lus10022378 locus=Lus10022378.g ID=Lus10022378.BGIv1.0 annot-version=v1.0 ATGACTAGTTCCTCCGACCAACGGCGTCGCCACCTAGTAGAACTGGACCTCCGGGATGCCTTCTCCAAGCTCCAAACCCATTACTCCGCCTTCCTTAACA ACTTCTCCCAGCTCCCTCTCTTCAATCCCAACGCCATCTCTTCTTTTCAAACCCACCTCCATTCCCAATTGCTTACCAGTTCTCAATCTCGCCCTCTCTG GGCTCGGATTCCCTCTGACCCGTCTCTTCTCCAACTCTCCAAACCTCCCTCCGCCACCACTCCTCCTCCTTTGACCTCTCAAGCCATCGAGGCTCGGTTG GCAGGCGTACCGGTTTATGCCCTCAGCAACTCCCGTGATGAGTTCGTTCTCGTCTCCGGAGTTTCTTCTTCCACTCCCAAGTCTCTCGGACTGATGTGCT TCAAGAAAGAGGACGCCGATACTCTCCTTCTCCAGATGAAGAGCATGGACCCTCTCATGCGGAGCGGTGGCTCCAAAGTTGTTGCTGTTGCTTTGAACAA GGTTTTTCAACTAAAAGTCGATGGGGTTTCCTTCAGGTTGATACCTGAGTATGCTCAAGTCAAGAACGCACTTAACGAGCTGAAAAATGCTGGGGTTTCT GATGACGGGTTCCCTGGAGTTCCAGTTTTCCAGTCAACGAGTCTGGTGTTGAGAAGCAAAAACAAGAGCTATCGGCCAGTGTTCTTTAGAAAGGAGGATT TAGAGAAATCACTATTACGTGCTTCACAAGATCAGAAGAAACTAAATCCTGCTTTAAAAGAAGGGGGCATTGAGGTGGCTGTGTTTGAAGACGTAATTAA GTCCATGCAGGAAACATCGGCGTGGAATGATGTTGTTTTTATCCCTCCTGGGTTTGACGTCTCAACTGGTTCTGCCATGTTATAG
AA sequence Show only first row Show all	>Lus10022378 pacid=23171689 polypeptide=Lus10022378 locus=Lus10022378.g ID=Lus10022378.BGIv1.0 annot-version=v1.0 MTSSSDQRRRHLVELDLRDAFSKLQTHYSAFLNNFSQLPLFNPNAISSFQTHLHSQLLTSSQSRPLWARIPSDPSLLQLSKPPSATTPPPLTSQAIEARL AGVPVYALSNSRDEFVLVSGVSSSTPKSLGLMCFKKEDADTLLLQMKSMDPLMRSGGSKVVAVALNKVFQLKVDGVSFRLIPEYAQVKNALNELKNAGVS DDGFPGVPVFQSTSLVLRSKNKSYRPVFFRKEDLEKSLLRASQDQKKLNPALKEGGIEVAVFEDVIKSMQETSAWNDVVFIPPGFDVSTGSAML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	0	1
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	3.5	0.8080
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	3.9	0.8057
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	3.9	0.8089
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	4.5	0.8288
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	4.7	0.8330
					Lus10015575 [exp]	6.4	0.7211
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10038807 [exp]	6.5	0.7465
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10028012 [exp]	6.9	0.7141
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	7.4	0.7928
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	8.9	0.7990

Compare expression of checked genes

Lus10022378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.