Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 74 / 9e-15 unknown protein AT4G02210 65 / 2e-11 unknown protein AT2G24960 64 / 5e-11 unknown protein AT1G30140 50 / 5e-07 unknown protein AT2G29880 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004397 [exp] 660 / 0 AT5G27260 77 / 6e-16 unknown protein Lus10010798 [exp] 405 / 6e-140 AT5G27260 61 / 5e-10 unknown protein Lus10022993 [exp] 342 / 8e-119 ND / Lus10024284 [exp] 308 / 2e-106 AT5G27260 50 / 2e-07 unknown protein Lus10006034 [exp] 268 / 3e-89 AT5G27260 42 / 2e-04 unknown protein Lus10028091 [exp] 260 / 6e-86 ND / Lus10032816 [exp] 224 / 3e-73 AT2G24960 57 / 1e-09 unknown protein Lus10018174 [exp] 216 / 6e-68 AT5G41980 68 / 1e-12 unknown protein Lus10022573 [exp] 204 / 3e-66 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215600 [exp] 62 / 7e-11 AT4G02550 77 / 7e-16 unknown protein Potri.011G163248 [exp] 61 / 2e-10 AT4G02550 93 / 4e-22 unknown protein Potri.006G265900 [exp] 62 / 3e-10 AT2G24960 761 / 0.0 unknown protein Potri.009G022650 [exp] 59 / 7e-10 AT4G02550 79 / 7e-17 unknown protein Potri.006G196716 [exp] 59 / 1e-09 AT4G02550 69 / 2e-13 unknown protein Potri.002G206500 [exp] 59 / 1e-09 AT4G02550 88 / 4e-20 unknown protein Potri.012G061366 [exp] 58 / 1e-09 AT4G02550 71 / 2e-14 unknown protein Potri.002G200600 [exp] 59 / 2e-09 AT4G02210 471 / 1e-163 unknown protein Potri.001G157750 [exp] 57 / 3e-09 AT4G02550 73 / 6e-15 unknown protein Potri.006G202550 [exp] 56 / 7e-09 AT4G02550 76 / 6e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022379 pacid=23171776 polypeptide=Lus10022379 locus=Lus10022379.g ID=Lus10022379.BGIv1.0 annot-version=v1.0 ATGAGGAGGAGAGCAAATGCAGAAGGTGGTAGTCAGAGTACTCGAGATTATAGACTGTGGACCAAACTCGAGGAAAGGACACTGGTAGAGTGTATGCTGG AGCTGACCGAGAAGGGACTCGTCGAGAAAGGAAACTTTCGAACAAGTGGGCTAAAGGAGCTGGAGAAGATGATGTATGCGAAGTTGGTTGACTGTGAACT GAAGGCTCTTCCCCACATAAAGTCCAAGATTCGTTATTTCAAGGAAAAGTTTATGGCATTTCTCCAACTCAAACAAGCAAGTGGTGTTGGTTGGGATGAT ATTCGTGGCTGCATCGTGGCTGATGATGATATGTTTAATGAGTGGTTGCTGCATCATCCAAAAGCCAGTGGTTTAAACAACAAGCCTTTACCATTCTTTG AGGAGTTATGCATCATATTTGGAATGGACCAGGCCCTTGGAGTTAATGTTGTGCAACCTTTAGATGCAGCCAGCAAGTTGGATTTGTATGGCCCTGGTGA CTTGATGGGAGAACAAAATGACACTTTCGATTCATATACTATTCCTGAGAACATGGAGCATACTGCAGTTATGGAAGAGATTATCAATCAAGGGATAGAC GTGCATGCGACCAGTCTGAAAGCGGTAGAGGGTGAAATCACCTCCAAACGTGTGCAGATAAACGGTAAGGAAAAAGCCTCATCTTCGGGAACAAAGAGAT CCAGGCAGCAATTTTCTGAGGAGGACAAAGCTCAACTTGCTACCAATCTTGCAATGACATCGGAGCACATAGCAAAGATTGCAACTAACTATTGCATTGA AGGTGAGTTAGCTGTCAAGAGGCAGTTCCTGTATCAAGAGCTGGTTAAGTTCTCTGAACTTTCTGTCTGTGATCGAACCAGAGCTTTGAGACACTTGCAC CGAGACGATGGTGATGCTAGCAGCTTCTTTCAGTTGCCAACCGATGAGGAGAAATTAGCCTTCCTGTATGCTATTTTGGAGTAG
AA sequence Show only first row Show all	>Lus10022379 pacid=23171776 polypeptide=Lus10022379 locus=Lus10022379.g ID=Lus10022379.BGIv1.0 annot-version=v1.0 MRRRANAEGGSQSTRDYRLWTKLEERTLVECMLELTEKGLVEKGNFRTSGLKELEKMMYAKLVDCELKALPHIKSKIRYFKEKFMAFLQLKQASGVGWDD IRGCIVADDDMFNEWLLHHPKASGLNNKPLPFFEELCIIFGMDQALGVNVVQPLDAASKLDLYGPGDLMGEQNDTFDSYTIPENMEHTAVMEEIINQGID VHATSLKAVEGEITSKRVQINGKEKASSSGTKRSRQQFSEEDKAQLATNLAMTSEHIAKIATNYCIEGELAVKRQFLYQELVKFSELSVCDRTRALRHLH RDDGDASSFFQLPTDEEKLAFLYAILE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10022379 [exp]	0	1

Compare expression of checked genes

Lus10022379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.