Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1) AT5G08580 174 / 2e-51 Calcium-binding EF hand family protein (.1) AT3G59440 41 / 0.0005 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005911 [exp] 303 / 2e-103 AT4G27790 133 / 3e-37 Calcium-binding EF hand family protein (.1) Lus10010165 [exp] 187 / 1e-56 AT5G08580 435 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10017370 [exp] 185 / 4e-55 AT5G08580 437 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10014050 [exp] 45 / 2e-05 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 45 / 3e-05 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010300 [exp] 320 / 1e-108 AT4G27790 321 / 1e-108 Calcium-binding EF hand family protein (.1) Potri.005G087600 [exp] 177 / 2e-52 AT5G08580 539 / 0.0 Calcium-binding EF hand family protein (.1) Potri.007G076300 [exp] 176 / 6e-52 AT5G08580 536 / 0.0 Calcium-binding EF hand family protein (.1) Potri.008G134300 [exp] 42 / 0.0001 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.010G107100 [exp] 42 / 0.0002 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.014G070700 [exp] 41 / 0.0005 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022381 pacid=23171731 polypeptide=Lus10022381 locus=Lus10022381.g ID=Lus10022381.BGIv1.0 annot-version=v1.0 ATGGCAAGGGCGTTAGCAGTTATATTCTACGCCCTCCTTATTACTGGCGCCTTTCTTCTTCTCGTTACCTTCTTCGCCGCCGACGACGTCGACGCCCACC GTCGCTACCGCCGCCTCGGGTACATTTTGTCCGAAACACCAAATTTCGATCCGTTGGTCGAGAAAATGCAGCAGGAGAAGGGGGCGGAGGTTGGACAGGA GTCCTCGGTGGTGTATTTTGGGGAGGAAGGGAAGTTCAACATGACAAAGAGGCTGGAGGTGCTGTTCCCGGCTGTGGACAAGACGCCGGCGGACGGTAAG ATAAGCTTTCAGGAGATGGAGGATTGGAATATGGGTCAGGCGGTTGACCGGTTGGCTTATCGGACGCAGAAGGAGCTGTTGATTCATGATAAGGATCAAG ACGGCGCCGTTAGCTTCCTTGAGTTCCTCCCGCAATTTTCCACCTCCGACATAGCGAAAAATGAAATGGGACATGGTCAAGCTGGATGGTGGATGGAGTT ATTCAAAATCGCAGATGTCAATGGCAATGGAAGACTGGACTTCTACGAATTTAACAACTTCTTGCACCCAGAGGACAGCCAGAACATGGATATCCAGATA TGGTTGCTCAAGGCAAATATTAAGAGAATGGATGAAGATGGGGATTCAGGGCTGAATTTGGCAGAGTTTTCAAAATATGTTTACGGCTTGTACAAAGTTT ACGTTGAATTTGAAAAGATGACGGTCCCTACTGCTCAAGACAAGTTCGCACAACTTGATATCGACCATGACAAGGTGCTGGCTGTGGAGGAATTGCTGCC CATACTTCCGTACCTGAAACCTGGAGAGCTCACTTACGCCAAATTCTACGCCCATTATTTGATTCGAGAGGCTGATGATGATGGAGATGGATATTTGATA TTGGAGGAGATGCAAAATCATGAATCTGTATTCTACACAACAATTTATGATAGTGTTTATGAGAATGATGATGATTATCACGATGAACTCTGA
AA sequence Show only first row Show all	>Lus10022381 pacid=23171731 polypeptide=Lus10022381 locus=Lus10022381.g ID=Lus10022381.BGIv1.0 annot-version=v1.0 MARALAVIFYALLITGAFLLLVTFFAADDVDAHRRYRRLGYILSETPNFDPLVEKMQQEKGAEVGQESSVVYFGEEGKFNMTKRLEVLFPAVDKTPADGK ISFQEMEDWNMGQAVDRLAYRTQKELLIHDKDQDGAVSFLEFLPQFSTSDIAKNEMGHGQAGWWMELFKIADVNGNGRLDFYEFNNFLHPEDSQNMDIQI WLLKANIKRMDEDGDSGLNLAEFSKYVYGLYKVYVEFEKMTVPTAQDKFAQLDIDHDKVLAVEELLPILPYLKPGELTYAKFYAHYLIREADDDGDGYLI LEEMQNHESVFYTTIYDSVYENDDDYHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	0	1
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	2.6	0.9138
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	3.3	0.8532
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10007737 [exp]	4.9	0.8491
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10016351 [exp]	7.3	0.8143
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	10.0	0.8333
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	11.0	0.7921
					Lus10000768 [exp]	11.2	0.8197
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	14.7	0.8766
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	15.2	0.8274
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10003785 [exp]	15.7	0.8197

Compare expression of checked genes

Lus10022381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.