Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27780 392 / 2e-136 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 388 / 4e-135 ACBP1 acyl-CoA binding protein 1 (.1) AT4G24230 85 / 4e-18 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT2G03430 72 / 3e-14 Ankyrin repeat family protein (.1) AT5G27630 71 / 2e-13 ACBP5 acyl-CoA binding protein 5 (.1) AT3G05420 67 / 8e-12 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G37500 61 / 4e-10 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G66055 61 / 4e-10 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G12320 58 / 5e-10 ankyrin repeat family protein (.1) AT2G26650 59 / 2e-09 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005910 [exp] 604 / 0 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10007764 [exp] 91 / 3e-20 AT4G24230 141 / 1e-38 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Lus10018702 [exp] 89 / 4e-19 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10020272 [exp] 74 / 4e-14 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10004499 [exp] 73 / 9e-14 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10002621 [exp] 71 / 3e-13 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10009696 [exp] 64 / 4e-12 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10036033 [exp] 64 / 6e-12 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10015176 [exp] 66 / 1e-11 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010200 [exp] 410 / 1e-143 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.012G017700 [exp] 409 / 6e-143 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.002G120200 [exp] 101 / 7e-24 AT4G24230 113 / 3e-28 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.014G018700 [exp] 100 / 2e-23 AT4G24230 133 / 2e-35 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.013G062000 [exp] 73 / 6e-14 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.013G018800 [exp] 71 / 2e-13 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 68 / 3e-12 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.001G295200 [exp] 67 / 3e-12 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 67 / 7e-12 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 64 / 1e-11 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein
Representative CDS sequence Show only first row Show all	>Lus10022382 pacid=23171760 polypeptide=Lus10022382 locus=Lus10022382.g ID=Lus10022382.BGIv1.0 annot-version=v1.0 ATGATAGAGTGGCAGCAATTGCTTCAGTCCATAATCCTCGGCCTCATCTTCTCTTACCTCCTCGCTAAGCTCATATCAATCGTCGTAGCCTTCAAAGACG ACAACCTTACCATTACACGCAACCCCTCTCCAGCTTCCTACCAACCCCTGAAATCCGGGGACGAAAGCTCTGGAGATTTCCCCGAGGGAGATTCCATCGC TGCTGAGCTGGGCAGTGTCAGGAACGATACCGCTGGTCACGGTGATTCCGATGATGATGACGAGGAGGAGGAAGACGACGACTGGGAAGGTGTAGAGAGC ACCGAGTTGGATGAGATCTTCAGCGCTGCCTCGGCATTTGTTGCGGCGGCGGCTGCTGACCGGCTTTCTCAGAAGGTGTCGACGGATGTGCAACTGCAGC TTTATGGCTTGTATAAGATTGCCACTGAAGGACCTTGCACAGTTCCCGCTCCTTCTGCTCTCAAAATGACTGCACGTGCCAAGTGGACAGCGTGGCAGAA ATTGGGTACTATGTCACCAGAAGAGGCAATGGAAAGATACATTGACCTAGTTTCAGAGATTTACCCTGCTTGGGATGCTGGTTCCGCTGCGAAACCCAGA ATTGGAGGGCGTGATGTACGAACCAATGATTCCCAAGGTCCAATGGGACCGGTTTTCAGCACCTTTGTTTATGAGGAAGAATCTGGGAATGAGCTGAAAA TGGATGCTGTTCATGCATTTGCAAGAGAGGGGGATGCAGATAATTTGCTGAAATCCATCAATCAGGATGTTTCTGTCAACTTAAAAGATAGTGAAGGCCG GACCCCTCTGCACTGGGCCGTGGATCGCGGTCACCTTAACATTGTGGAACTGCTTGTTGAACGAAGTGCTGATATAAATGCGAAGGACAATGAAGGGCAA ACAGCTTTGCATTATGCTGTGGTCTGCGATAGAGAAGGTATTGCTGAGGTCCTAGTGAAGCAAAACGCCAACATAGACGAAAAGGATAACGACGGAATGT CTGCTAGGGAACTATGCGAGTCGAACTGGTCCTGTCTCCAGAAAGCTGTAGCCACAGAATGA
AA sequence Show only first row Show all	>Lus10022382 pacid=23171760 polypeptide=Lus10022382 locus=Lus10022382.g ID=Lus10022382.BGIv1.0 annot-version=v1.0 MIEWQQLLQSIILGLIFSYLLAKLISIVVAFKDDNLTITRNPSPASYQPLKSGDESSGDFPEGDSIAAELGSVRNDTAGHGDSDDDDEEEEDDDWEGVES TELDEIFSAASAFVAAAAADRLSQKVSTDVQLQLYGLYKIATEGPCTVPAPSALKMTARAKWTAWQKLGTMSPEEAMERYIDLVSEIYPAWDAGSAAKPR IGGRDVRTNDSQGPMGPVFSTFVYEEESGNELKMDAVHAFAREGDADNLLKSINQDVSVNLKDSEGRTPLHWAVDRGHLNIVELLVERSADINAKDNEGQ TALHYAVVCDREGIAEVLVKQNANIDEKDNDGMSARELCESNWSCLQKAVATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	0	1
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	1.7	0.9616
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	2.8	0.9484
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	5.2	0.9471
AT2G24550			unknown protein		Lus10020142 [exp]	5.5	0.9355
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	8.0	0.9335
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	9.2	0.9358
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	9.8	0.9117
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	9.9	0.9327
AT5G27830			unknown protein		Lus10029881 [exp]	11.0	0.9351
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	11.2	0.9131

Compare expression of checked genes

Lus10022382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.