Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53070 245 / 1e-82 Ribosomal protein L9/RNase H1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005909 [exp] 406 / 4e-146 AT5G53070 248 / 1e-83 Ribosomal protein L9/RNase H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121228 [exp] 288 / 8e-100 AT5G53070 251 / 4e-85 Ribosomal protein L9/RNase H1 (.1) Potri.012G017300 [exp] 288 / 2e-99 AT5G53070 251 / 4e-85 Ribosomal protein L9/RNase H1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03948 [flax] [poplar] Ribosomal_L9_C Ribosomal protein L9, C-terminal domain PF01281 [flax] [poplar] Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022383 pacid=23171639 polypeptide=Lus10022383 locus=Lus10022383.g ID=Lus10022383.BGIv1.0 annot-version=v1.0 ATGGCTTATCTTCAGCATGGCAGAAGTGGCTTGCGGCAAATTCTTAGAGGAGCCAATGGTAGGATCTCCGATTCCGCGTTACCTACGTCGATTTATGCCT GTCAGGGTATTCGGTTTAGGAAGCTGGAGGTTATTCTAACATCGAACATAGAGAAGCTTGGTAAAGCAGGTGAAACAGTGAAGGTTGCTCCTGGATATTT TCGCAACCACTTGATGCCTAAATTGCTGGCTGTACCTAATCTTGACAAGTTTGCTCATCTGATCAGAGAGCAGCGCAAGTTGTACCAGCAAGAGGAGGAA GAAGAGGTTAAGAAGGTGGTTGATGATACAAAAGAAGATCGAATGAAAGAATTCGAAACAGCTGCAAAGCGCTTGGATAAATCCCGTGTGACATTTAGGG TGGGAATCGATGCTCAGAAGTTCAAAGCTCGTGCCTCAAAGGATGAACCGATAGTAATTCAGGCACCAGTGACGAAGGATGATATTGTAAAAGAGGTTGC AAGGCAGCTTAATGTACTGATTGATCCAGACAACCTTCATCTGCCTACACCGTTGACGACATTCGGGGAGTATGAGGTGCCCATGCGTCTGCCGAGGTCA ATCCCATTGCCAGAAGCAAAAGTTAACTGGACGCTGACTGTTAAAATCAGGGGAAGATAG
AA sequence Show only first row Show all	>Lus10022383 pacid=23171639 polypeptide=Lus10022383 locus=Lus10022383.g ID=Lus10022383.BGIv1.0 annot-version=v1.0 MAYLQHGRSGLRQILRGANGRISDSALPTSIYACQGIRFRKLEVILTSNIEKLGKAGETVKVAPGYFRNHLMPKLLAVPNLDKFAHLIREQRKLYQQEEE EEVKKVVDDTKEDRMKEFETAAKRLDKSRVTFRVGIDAQKFKARASKDEPIVIQAPVTKDDIVKEVARQLNVLIDPDNLHLPTPLTTFGEYEVPMRLPRS IPLPEAKVNWTLTVKIRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	0	1
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	1.4	0.9219
AT4G22000			unknown protein		Lus10008487 [exp]	2.0	0.9294
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	4.2	0.8993
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	6.5	0.9116
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	7.3	0.9154
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	7.9	0.9099
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	11.0	0.8998
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10002489 [exp]	11.1	0.8744
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	11.6	0.9124
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	11.7	0.9154

Compare expression of checked genes

Lus10022383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.