Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27800 432 / 3e-150 TAP38, PPH1 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) AT1G43900 114 / 4e-28 Protein phosphatase 2C family protein (.1) AT5G10740 110 / 9e-27 Protein phosphatase 2C family protein (.1) AT5G24940 111 / 1e-26 Protein phosphatase 2C family protein (.1) AT3G62260 105 / 1e-24 Protein phosphatase 2C family protein (.1.2) AT2G25620 105 / 1e-24 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT4G31750 101 / 5e-24 WIN2 HOPW1-1-interacting 2 (.1) AT5G53140 102 / 8e-24 Protein phosphatase 2C family protein (.1) AT3G51470 100 / 2e-23 Protein phosphatase 2C family protein (.1) AT2G33700 99 / 2e-22 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005908 [exp] 816 / 0 AT4G27800 426 / 1e-147 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) Lus10020104 [exp] 112 / 8e-28 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 111 / 1e-27 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 105 / 4e-25 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10001682 [exp] 106 / 5e-25 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10042430 [exp] 100 / 7e-24 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 100 / 9e-24 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 101 / 1e-23 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 100 / 2e-23 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010600 [exp] 496 / 1e-175 AT4G27800 510 / 0.0 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) Potri.006G267600 [exp] 111 / 1e-27 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 107 / 2e-26 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 107 / 4e-26 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.018G115100 [exp] 107 / 8e-26 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.005G186001 [exp] 105 / 9e-26 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 105 / 1e-24 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.008G059200 [exp] 104 / 2e-24 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 104 / 3e-24 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.015G019200 [exp] 102 / 4e-24 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10022384 pacid=23171660 polypeptide=Lus10022384 locus=Lus10022384.g ID=Lus10022384.BGIv1.0 annot-version=v1.0 ATGGCTCTATTAGGGCCACACCAGCTCGAACGGCTCCCACTGACCAACCGCCAACTTGGTCACTTCTCCACCGGCGGCCGTTTCTCCAGACCACCCACCA CCGCTAACATACTTAGCACAGCTCAACATCACCCTCTTCCAGTCCATCAATCTGCCAAAACCCTTCGTTGCTCAGCCATCGCCATAGACGCAGCTTCTAG TTTCTCCGATGTCGCTGGTGTCAGGTGGGGGTTCACTTCCGTCCAGGGCGTCCGTGAGGAGATGGAGGATGATATCGTCATTCGATCCGATGGCGGCCTT GACGGGTTCTCTTTCGCCGCTGTTCTCGACGGCCACGGCGGCTTCAATTCTGTCAACTTCCTCAGGGATGAATTGTACAAAGAGTGCGTGGCTGCTTTAC AAGGTGGGTTGCTATTGGGTGGGAAAGACTACAACGCCATCAAAGAGGCTCTGGAATCTGCGTTCGTCAATGTTGATTCGAAATTGTTAACCTGGCTGGA AATGAATCACGCCGAGGATGAATCTGGTTCGACTGCCACTGTTGTGATTATCGCAAGTGATAGGCTCATCATTTCCCATATCGGGGACTCCAATGTGGTA TTGTCTCGTTCTGGTAAAGCAGAAGTGTTGACTGATCCTCATCGTCCATATGGAAGCAACAAGAGTTCCCTTCAAGAAATCAGAAGAATCAGGGAAGCAG GTGGATGGCTTTCCCTGAATGTGGTCTATCATGAACGTCACTGCACCGGTAGATACTCATTGTATTGTGATAGAGACGAACCCTTGTATTACATTGGAAA CTTACGTTTGATGCAATGCCTCCAGATCAACAATGGGAGGATTTGTGGTGACATAGCTGTATCTCGTGCATTTGGTGATATGAGGATGTTGCAGAAAGGA GTCCAGGAAGGTCGATGGACAGAGAAGTTTACTTCTAGAGTGCAATTCAATGGAGACTTAGTTGTTGCATCTCCAGATATTTATCAAGTAACATTGGGTT CAGATGCCGAGTTTATACTATTAGCATCTGATGGCTTATGGGACTACATAAAAAGTTCAGATGCAGTTCAATTTGTTAGGGATCAACTTAAGCAACATGG AAATGTCCAGGTAGCCTGTGAAGAACTTGCAAGAGCAGCTCTGGATCGACGTTCACAAGACAACATTAGCATCATTGTCGCAGATTTAGGGAGGACAGAT TGGCAAACTGTGCCGGTTGAGCAGAAAAATGTTGTGTTTGAACTAGGCCAAGCTTTTGCTACGATTGGCATCGTCTCAGTTGGAATATGGATGACATGTC TGCTTTCTTTCTAG
AA sequence Show only first row Show all	>Lus10022384 pacid=23171660 polypeptide=Lus10022384 locus=Lus10022384.g ID=Lus10022384.BGIv1.0 annot-version=v1.0 MALLGPHQLERLPLTNRQLGHFSTGGRFSRPPTTANILSTAQHHPLPVHQSAKTLRCSAIAIDAASSFSDVAGVRWGFTSVQGVREEMEDDIVIRSDGGL DGFSFAAVLDGHGGFNSVNFLRDELYKECVAALQGGLLLGGKDYNAIKEALESAFVNVDSKLLTWLEMNHAEDESGSTATVVIIASDRLIISHIGDSNVV LSRSGKAEVLTDPHRPYGSNKSSLQEIRRIREAGGWLSLNVVYHERHCTGRYSLYCDRDEPLYYIGNLRLMQCLQINNGRICGDIAVSRAFGDMRMLQKG VQEGRWTEKFTSRVQFNGDLVVASPDIYQVTLGSDAEFILLASDGLWDYIKSSDAVQFVRDQLKQHGNVQVACEELARAALDRRSQDNISIIVADLGRTD WQTVPVEQKNVVFELGQAFATIGIVSVGIWMTCLLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	0	1
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	1.0	0.9380
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	4.2	0.9295
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10034438 [exp]	5.3	0.9178
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	6.8	0.9327
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	11.0	0.9232
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	12.0	0.9019
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10013591 [exp]	12.8	0.9094
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	15.1	0.9186
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	16.4	0.9225
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	19.3	0.8885

Compare expression of checked genes

Lus10022384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.