Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26820 89 / 2e-20 RNS3 ribonuclease 3 (.1) AT1G14220 84 / 1e-18 Ribonuclease T2 family protein (.1) AT2G02990 80 / 4e-17 RNS1, ATRNS1 ribonuclease 1 (.1) AT2G39780 66 / 6e-12 RNS2 ribonuclease 2 (.1.2) AT1G14210 62 / 1e-10 Ribonuclease T2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003110 [exp] 217 / 3e-69 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10035881 [exp] 206 / 8e-65 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10035882 [exp] 205 / 1e-64 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10027978 [exp] 85 / 9e-19 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10030468 [exp] 83 / 4e-18 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10012823 [exp] 83 / 4e-18 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10019560 [exp] 69 / 3e-14 ND 39 / 3e-04 Lus10036409 [exp] 61 / 2e-10 AT2G39780 276 / 5e-94 ribonuclease 2 (.1.2) Lus10041084 [exp] 58 / 3e-09 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168700 [exp] 81 / 1e-17 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086700 [exp] 79 / 6e-17 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.008G086800 [exp] 78 / 1e-16 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.014G174400 [exp] 66 / 3e-12 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.013G134400 [exp] 49 / 2e-06 AT2G02990 82 / 4e-18 ribonuclease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10022385 pacid=23171641 polypeptide=Lus10022385 locus=Lus10022385.g ID=Lus10022385.BGIv1.0 annot-version=v1.0 ATGGGTCTAGGTGGTGGTTTGACGTCGGTGATGGTGCTAGGGCAGCTGCTGCTGCTGCTGGTGTTAGCTGCTACTAGTACAAATGCCCAGAACTTTGATT TCTTTTACTTGGTCATGCAATGGCCTCCCGCATACTGCAACCAACCTCGGGCCAATTGCAGGACTCCAATCATCAACAACAGGTTTACCATTCATGGAAT GTGGCCACAGAAGAACAATCCAATCATCAACAACAGGTTTACCATTCATGGAATGTGGCCTCAGAAGAACAATGGCCAAAGCCCACAAAATTGTCCTGGT TCTGTCCCTGACGTCCGAAGAAGCGGACGTGTGGATGCACCGACGATGGCCCTGCTAGACACGCACTGGCCGAATCTACAGCGACCACCGAACAGCGTGT TTTGGACGTATGAGTGGAATAAGCACGGAACCTGCTCCGGGAACAACGGCCAGAGCCCCCAAAATTGTCCTGGTTCTGTCCCTGACGTCCGAAGAAGCGT CAACTCCAAGCCATCGCCAACAATCCATCTCAACTCCATCAATCCAAGCGATTCAATTTCACCATCTCCCACCGACGACGACTTACAGCAGCAGGAGCTC GCCAGCAGTGACGTCGTCGACGAGCCACTGCGACCACTCCTCTCCTCCTCCACTCTCTCGATTCTTCGATCTGCAAAACCACAGGCTTCCTTCGTCGCCA CAACCACTCCTCTCCTCCTCCACTCTCTCGATTCTTCGATCTGCAAAACCACAGGCTTCCTTCGTCGCCACAACCACTCCTCTCCTCCTCCACTCTCTCG ATTCTTCGATCTGCAAAACCACAGGCTTCCTTCGTCGCCACAACCACTCCTCTCCTCCTCCACTCTCTCGATTCTTCGATCTGCAAAACCACAGGCTTCC TTCGTCGCCACAACCACTCCTCTCCTCCTCCACTCTCTCGATTCTTCGATCTGCAAAACCACAGGCTTCCTTCGTCGCCACAACCACTCCTCTCCTCCTC CACTCTCTCGATTCTTCGATCTGCAAAACCACAGGCTTCCTTCGTCGCCACAACCACTCCTCTCCTCCTCCACTCTCTCGATTCTTCGATCTGCAACACC ATAG
AA sequence Show only first row Show all	>Lus10022385 pacid=23171641 polypeptide=Lus10022385 locus=Lus10022385.g ID=Lus10022385.BGIv1.0 annot-version=v1.0 MGLGGGLTSVMVLGQLLLLLVLAATSTNAQNFDFFYLVMQWPPAYCNQPRANCRTPIINNRFTIHGMWPQKNNPIINNRFTIHGMWPQKNNGQSPQNCPG SVPDVRRSGRVDAPTMALLDTHWPNLQRPPNSVFWTYEWNKHGTCSGNNGQSPQNCPGSVPDVRRSVNSKPSPTIHLNSINPSDSISPSPTDDDLQQQEL ASSDVVDEPLRPLLSSSTLSILRSAKPQASFVATTTPLLLHSLDSSICKTTGFLRRHNHSSPPPLSRFFDLQNHRLPSSPQPLLSSSTLSILRSAKPQAS FVATTTPLLLHSLDSSICKTTGFLRRHNHSSPPPLSRFFDLQNHRLPSSPQPLLSSSTLSILRSATP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	0	1
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	1.7	0.8422
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000217 [exp]	2.0	0.8434
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	5.2	0.8544
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	8.0	0.7947
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	12.6	0.7661
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	15.0	0.8296
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043406 [exp]	15.3	0.8289
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	17.2	0.8372
AT2G43590			Chitinase family protein (.1)		Lus10003227 [exp]	26.2	0.7139
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	27.0	0.7583

Compare expression of checked genes

Lus10022385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.