Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26760 273 / 2e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005906 [exp] 1052 / 0 AT5G26760 320 / 6e-103 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010900 [exp] 629 / 0 AT5G26760 322 / 5e-103 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04181 [flax] [poplar] RPAP2_Rtr1 Rtr1/RPAP2 family
Representative CDS sequence Show only first row Show all	>Lus10022386 pacid=23171743 polypeptide=Lus10022386 locus=Lus10022386.g ID=Lus10022386.BGIv1.0 annot-version=v1.0 ATGTCAACGGAGCAGTCAACCTCTGTTGCTAAAGCTGTTTACAAGCTACAGCTCTCTCTATATGCTGGTATCCAAAATGAAGATCAGCTGTTTGCAGCTG GGTCGTTGATGTCTCAGGGTGACTATGCTGACGTTGTAGCTGAGAGGTCTTATATTAACCACTGTGGATACCCTCTTTGCAAGAACGAATTGCCTTCCGA ACGGCCTAGAAAGGGTCGGTACCGCATTTCTCTGAAGGAACACAAAGTTTATGACCTGCACGAGACATACATGTACTGCTCATCCGGTTGTCTTGTCAAC AGTCGAGCTTTTGCTGGGATCTTACAGGAACAGCGGTCCTTGGTTCAAAACCCATCCAAGCTTGTGGAGATTTTAAGTCTCTTTGATACTTCTGATTTGG AGTCTATAGAGGGTACATGGAAGAAATCTGATTTGCGAATGTCGAAATTGGTAATTCAGGAGAAAGGGGAAGTTAAAGCTGGTGAGGTGCCTCTGATAGA GAACACTGGTCCATCTAATTCAATTGAAGGGTATGTACCACGAAGAGATGGAAAGTCTAAGACTCCATCGCCAGCAATAGGCCGCAAAGCTCATAATGCT AAATCGAGCGCAGAAAAATATTCTCTTCTCAATGACTTGGACTTCACAAGCACAATCATCATCGGCGATGGATATAGCGTTTTGAAATCTCCTTCAAGCT TGCCAACGTCTAACTCAGAGGTGACTGACAAAGACGGAGAAGGAACTAGTGGAAAGTTAAATGTCCAATCATCTAGTTCAACGAAGCTGAGCTCTGGTAA ATTACCTAGAAAGATGAATGCAAGCAAGTCTAAAGCAGTGAAGACTCATGGAGGAGCCCGGGATGTGGCTTCACCATCAAATCCTCAGACCACTTCCAGT TTGAATAATGGAGGAGCTGGAGAGGCAAGTGAAGCTGGTGAAGCATCTAATTTAGGCCAATCCAGGTTGAAGCCCTCTCTTAAGTCTTCCTGTTCAAAGA AACTTGGTCGGTCATTGACTTGGGCTGATGAGAATGCCGGGAGTTCAGAAAGTGATGGTCTTTGTAATGTCAGGGAGATGAAAGATGATTGTCTATATAC TTCTATATCTGATGAATCATACAAAGGAGATGATGAAGATAATTTGTTGCTTGAATCAGCAGAAGCCTGTGCAAAGGCTCTCAGTCAAGCTGCAGAAGCT GTTGCATCTGGCCAGGTCGACGTTGCTGATGCCATGTCTGAAGTTGGATTAACAATATTGCCCCAAGCAAACAATATCGATCAGAATGATTCTGCAAATG ATGACAACACACAGCAAGAAGATTCGGAAACTATTCAGTGGCCCGGAAAGCCTGGTATTCCTCAATCTGACATGTTCAACCCTGATGATATATTGTATGA TGGTCCTCCAGAAGGATTCAGTTTGGAGTTATCCCCTTTCGCAACAATGTGGATGGCACTCTTCGCATGGGTAACCTCATCCTCCTTGGCTTACATATAT GGGAAAGATGACAGCTCCCACGAGGATTATTTGTCAGTCGACGGAAGGGAGTACCCCCGTAAGATTGTCTCAGCAGATGGCTACTCTTCTGAAATCAAAC GAACTGTTGAAGGTTGTCTAGCTCGTGCTTTACCTGCTGTGGCCGCTGATGTAAGGCTGCCAATACCAATTTCTACCTTGGAGCAAGGAGTGGGACGTCT GTTGAACACAATGACTTTTGTGGATGCAATTCCAGCATTCAGAACGAAGCAGTGGCAAGTCGTCACAATTCTCTTTATGGAAGCTCTCTCAATATGCCGG ATTCCTACTCTGTCTTCTCACATAAGTAATCGAAGGGCGGTAATTCACCAGCAAGAAGATTCGGAAACTATTCAGTGGCCCGGAAAGCCTGGTATTCCTC AATCTGACATGTTCAACCCTGATGATATATTGTATGATGGTCCTCCAGAAGGATTCAGTTTGGAGTTATCCCCTTTCGCAACAATGTGGATGGCACTCTT CGCATGGGTAACCTCATCCTCCTTGGCTTACATATATGGGAAAGATGACAGCTCCCACGAGGATTATTTGTCAGTCGACGGAAGGGAGTACCCCCGTAAG ATTGTCTCAGCAGATGGCTACTCTTCTGAAATCAAACGAACTGTTGAAGGTTGTCTAGCTCGTGCTTTACCTGCTGTGGCCGCTGATGTAAGGCTGCCAA TACCAATTTCTACCTTGGAGCAAGGAGTGGGACGTCTGTTGAACACAATGACTTTTGTGGATGCAATTCCAGCATTCAGAACGAAGCAGTGGCAAGTCGT CACAATTCTCTTTATGGAAGCTCTCTCAATATGCCGGATTCCTACTCTGTCTTCTCACATAAGTAATCGAAGGGCGGTAATTCACCAGGTGTTAGAGGGT GCTCGTATTGGTTCCGATGAGTACGCAGCGATGAAAGAGTTGATGATGCCTTTAGGACGAGTGCCTGGTTTTGCATCCCTAAGTGGAGCCTAG
AA sequence Show only first row Show all	>Lus10022386 pacid=23171743 polypeptide=Lus10022386 locus=Lus10022386.g ID=Lus10022386.BGIv1.0 annot-version=v1.0 MSTEQSTSVAKAVYKLQLSLYAGIQNEDQLFAAGSLMSQGDYADVVAERSYINHCGYPLCKNELPSERPRKGRYRISLKEHKVYDLHETYMYCSSGCLVN SRAFAGILQEQRSLVQNPSKLVEILSLFDTSDLESIEGTWKKSDLRMSKLVIQEKGEVKAGEVPLIENTGPSNSIEGYVPRRDGKSKTPSPAIGRKAHNA KSSAEKYSLLNDLDFTSTIIIGDGYSVLKSPSSLPTSNSEVTDKDGEGTSGKLNVQSSSSTKLSSGKLPRKMNASKSKAVKTHGGARDVASPSNPQTTSS LNNGGAGEASEAGEASNLGQSRLKPSLKSSCSKKLGRSLTWADENAGSSESDGLCNVREMKDDCLYTSISDESYKGDDEDNLLLESAEACAKALSQAAEA VASGQVDVADAMSEVGLTILPQANNIDQNDSANDDNTQQEDSETIQWPGKPGIPQSDMFNPDDILYDGPPEGFSLELSPFATMWMALFAWVTSSSLAYIY GKDDSSHEDYLSVDGREYPRKIVSADGYSSEIKRTVEGCLARALPAVAADVRLPIPISTLEQGVGRLLNTMTFVDAIPAFRTKQWQVVTILFMEALSICR IPTLSSHISNRRAVIHQQEDSETIQWPGKPGIPQSDMFNPDDILYDGPPEGFSLELSPFATMWMALFAWVTSSSLAYIYGKDDSSHEDYLSVDGREYPRK IVSADGYSSEIKRTVEGCLARALPAVAADVRLPIPISTLEQGVGRLLNTMTFVDAIPAFRTKQWQVVTILFMEALSICRIPTLSSHISNRRAVIHQVLEG ARIGSDEYAAMKELMMPLGRVPGFASLSGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26760			unknown protein		Lus10022386 [exp]	0	1
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	4.6	0.8272
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	10.7	0.8236
AT3G56870			unknown protein		Lus10018851 [exp]	15.0	0.8152
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	19.0	0.7919
AT5G17270			Protein prenylyltransferase su...		Lus10030019 [exp]	21.4	0.8020
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	24.8	0.8142
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	25.7	0.7946
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	27.8	0.8023
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	31.3	0.8008
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	31.7	0.8000

Compare expression of checked genes

Lus10022386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.