Plant FIBer expression Database

Lus10022387 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53080 470 / 3e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G27500 43 / 0.0005 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005905
[exp]
914 / 0 AT5G53080 525 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G010800
[exp]
653 / 0 AT5G53080 579 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10022387 pacid=23171778 polypeptide=Lus10022387 locus=Lus10022387.g ID=Lus10022387.BGIv1.0 annot-version=v1.0
ATGGCTGCCTCTGTCTTATCTTCTCCCTGCTTCACCAAACAGTTCGGTAGAGCATGTGTATGTGCACAACCGAGTCCCTTGTGGAACAGTATAGCCAGCT
TCTCACTTTGCACTAAGAAGAACAGATGCCGGATCAAAACAAACATGATACATTCAGAAGGTCTCCCTCGTCACTGGATTTCGAAAATGTTTGCGTCTGT
TGGTTCAGTAAATGCGGATACAGAATGCGAAGAAAATCTTGTTTCTTCACGAGTCTCATCTTCAAGGGACTCAGTGAGGACTAAAACATTTCCTGATGAG
TCGAGTAATCAATCAGATGGTGCAGACAGTTTCCTCGTGCAGCTGGAGGAGTTGTTTGATGAAATCAAATGGATGATTAAAATGGGAAGGAAACGTAATG
CTAGAGACTTACTTCAGGCTAATTATGAACTTGTCAAAGAACAGATTTCTGGAGGTGCCAAAGGAATTCAACAGGCTGCTACACTTGACATTGTAGCATT
GGGGCACATGCTCCTCGGAGACCTGAAGATCGTTGGTCACATCCTGAACACTTTGCAAGAGATTGTTGTGTTCTTAAATGATGACACACCAGTTCTGGAT
TTGGTGTTGACACATATGGGGAGCATGTATTCAGCCTTGGGAAAATACAATAAATCTACGCTTGTGTATCAAAGAGCAATCAGACTTTTAGAGGAAAAGT
ATGGAAAATCCAGCACTTTCCTTGTGTCACCTTTGCTGGGGATGGCAAAAAGTCTTGCTTCTGTGAAGAGGACTACGAAAGCGGTAGAAATCTACCACCG
CACGATAAATATCTTGGAATCAAGCTGTGGAGCTGAAAGTGAAGATCTAGTTGTAGCTTTAACTGCTCTTGGAAGCCTTTTGGTTAAGGAAGGAAAAGCT
ACTGATGCAGAAAGTCCATTTCTAAGCTCTTTCATCTTCTATAGAATCTTAAGCATTTACTCAAAATTATATGGGGAGAATGACGGAAGAGTGGGAATGG
CCATGGCTTCTGTGGCCCATGCGAAGTGTGCATCAGGGAAAGCTGAAGAAGCCATTGATTTATATAGAAGTGCTCTCGAGATACTAAATTATGGAAGCCA
TGTGAATTTTGATGATGGTGTTGTGGAGAAGATGAAGGTAGACTTAGCCGAATTACTTCACGTGGTAGGAAGAGGGAATGAGGGCCGAGAACTGCTTGAG
GAGTGCTTGTTAATTACCGAGAAATCTCAAGGGAAGGAACACCCTAGCTCAGTGCCTCACCTTATGAACCTTGCAACCTCATATTCACAGTCGAAAAACT
ATGTCGAGTCAGAACGGCTTTTGAGAACAAGCTTGGAGATTAAGAGGAGAAATGGTAACCCTGAGGACCCGTCCATTACATTCCCAATGCTGCAACTTGC
AGTGACCCTCTCTCATTTGAAAAGAGACGATGAAGCCGAACAACTAGCACTCGAAGCTTTGCAACTTCGTCAGAAAGCTTTCGGGAAGGATTCTATGCCT
GCTGGGGAGGTTATGGATTGTTTGGTATGGATCCAGAGTAGATTAGGGAAAGCGGAATCGGAGTTGCTGGAGATGCTGCAAAGGGTGCTGAAGATTCAGG
AGGCCAACTTTGGTGTTGGGAGTGAGGAGACAATGCCAACTCTGAAAAAGATGGCTTTCTACTTTGACAAGCTCGGAAGGAAAGATGAGAAGCTCTTCAT
GCAGAGACGATTATCTGCCTTGAGAAATAAATTTAAACAAATGGTTGATTACTAG
AA sequence
>Lus10022387 pacid=23171778 polypeptide=Lus10022387 locus=Lus10022387.g ID=Lus10022387.BGIv1.0 annot-version=v1.0
MAASVLSSPCFTKQFGRACVCAQPSPLWNSIASFSLCTKKNRCRIKTNMIHSEGLPRHWISKMFASVGSVNADTECEENLVSSRVSSSRDSVRTKTFPDE
SSNQSDGADSFLVQLEELFDEIKWMIKMGRKRNARDLLQANYELVKEQISGGAKGIQQAATLDIVALGHMLLGDLKIVGHILNTLQEIVVFLNDDTPVLD
LVLTHMGSMYSALGKYNKSTLVYQRAIRLLEEKYGKSSTFLVSPLLGMAKSLASVKRTTKAVEIYHRTINILESSCGAESEDLVVALTALGSLLVKEGKA
TDAESPFLSSFIFYRILSIYSKLYGENDGRVGMAMASVAHAKCASGKAEEAIDLYRSALEILNYGSHVNFDDGVVEKMKVDLAELLHVVGRGNEGRELLE
ECLLITEKSQGKEHPSSVPHLMNLATSYSQSKNYVESERLLRTSLEIKRRNGNPEDPSITFPMLQLAVTLSHLKRDDEAEQLALEALQLRQKAFGKDSMP
AGEVMDCLVWIQSRLGKAESELLEMLQRVLKIQEANFGVGSEETMPTLKKMAFYFDKLGRKDEKLFMQRRLSALRNKFKQMVDY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G53080 Tetratricopeptide repeat (TPR)... Lus10022387
[exp]
0 1
AT5G53920 ribosomal protein L11 methyltr... Lus10005914
[exp]
1.0 0.8687
AT5G40160 EMB139, EMB506 embryo defective 506, EMBRYO D... Lus10014522
[exp]
5.7 0.8559
AT1G13270 MAP1B, MAP1C methionine aminopeptidase 1B (... Lus10021701
[exp]
7.2 0.8621
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Lus10013548
[exp]
7.7 0.8133
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Lus10033990
[exp]
8.1 0.8162
AT5G40530 S-adenosyl-L-methionine-depend... Lus10022276
[exp]
11.6 0.8292
AT5G11470 bromo-adjacent homology (BAH) ... Lus10038628
[exp]
12.5 0.8291
AT1G78010 tRNA modification GTPase, puta... Lus10029578
[exp]
13.1 0.8211
AT1G55170 unknown protein Lus10034321
[exp]
13.4 0.8104
AT5G13980 Glycosyl hydrolase family 38 p... Lus10036074
[exp]
13.7 0.8173

Lus10022387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.