Plant FIBer expression Database

Lus10022388 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72320 663 / 0 APUM23 pumilio 23 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005913
[exp]
1259 / 0 AT1G72320 707 / 0.0 pumilio 23 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G073000
[exp]
791 / 0 AT1G72320 884 / 0.0 pumilio 23 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00806 PUF Pumilio-family RNA binding repeat
Representative CDS sequence
>Lus10022388 pacid=23171716 polypeptide=Lus10022388 locus=Lus10022388.g ID=Lus10022388.BGIv1.0 annot-version=v1.0
ATGGGTAGGGATAATAAATTCTACAAACAGGGTTCGAGGGAAAAGGGCATGGGGAAAAAATCCGCCTCTAGCTTTCAACGGGATGATGCAAACAACAACT
CACACGGGCACGCTGGAACTACGAAGCATCACGATTCATCCAGCTCAACAAACCCACATCATAATGTTATCAGGAAAGAAATTGATCCAGAAACAAAAAC
ATACTTCACAGAGATTGCGAATCTTTTCGAAAGTAGTGGAATTGACTTAGAGGAGCGATCAGTAATATGTAGTAATGCTCTTGAAGAAGCCAGGGGGAAA
GAATTTGAGCTGGCAACTGATTATATAATAAGCCATACTATGCAAAGTCTCCTAGAAGGATGTGATGTGGACCATCTTTGTGGCTTTCTCCGAGGTTGCG
CAGAGTTGTTTCCAGTAATAGCATCTGATAGATGTGGTTCTCATGTCGCTGAGACAGCACTCAAGTCTTTGGCTATGTTTGTTCAAGACGATGCTAACTA
TTCGGCCATTGAAGAGACGTTATCCGCCATTTGCCAGGTTATTGCGGCCAATCCTGCTGATATGATGTGTAGCCAACATGGATCTCATGTTCTCCGGACA
CTTCTATGTCTTTATGGGGGGGCACGGTTGGATTCCCCAGAATTTCATGGAGCGAAGTCACCCTCAAATTTAGCTAATCGTTTAAATCTTCAAGCAACTC
ATATGCCTGGCACTGATTCAGTTCATATTCACCAGGGATTTCCTGGTCTACTAAAATCTTTTGTGTCAGCGATGTTGAAACGTAATGGAGAAGGCATCCT
TGTGGATCAATGCAGCAGTTTAGTTCTTCAGACAGCACTGAAGTTGCTTGCGGGAAATGATGAAGAATTATCGCATGTAATTCCAGTCCTTCTTGGCTGC
AAAAACCAAAACTTAACTGAAGGAAACTTGATAGACTTGTCCATTGTAAGAAAGGTTGTGGAACTCATGAAAGAAACTGCATTTAGCCACTTGATGGAGC
TTTCATCAGATAGATGTGGTAACTTTGTTGTTCAAGCGTTGATTTCTCACACAAGAGATGAAAGACAGGTGAAGTTCATATGGGAAGAACTTGGTCCAAA
ATGCAAAGATCTACTGGAAATGGGGAGGTCAGGAGTAATTGCTTCCTTCATTGCTGCTAGTCAAAGACTTCATACTTCTGAACGGGAGTGCTGCCAGGCC
CTTGCCACTGCAGTGAGTGCCGGATCGGACGAGTCTCCAAGATGGATTATTCCGCGAATTTTATTTCTTGAAAATTACTTGAGATGCGAGGACAAGTCCT
CTTGGGGATGGCCAAATGGTTTTAGGATGCATGTTATGGGTTCCCTCATTCTGCAGGCGATTTTTAAATTCCCAGCTGAGTTTATACAAGCTTATATCAC
AAGTATGACATGCATGGAAGTTGAACATGTCCTTGAAGTTGCAAAGGATGGCGGTGGAGCACGTGTCCTCGAGGCATTCTTAGATTCAGCTGCCTCTGGA
AAGCAGAAGCGAAGAGTTATTTCCAAGCTGAGAGGACATTTTGGAGAGCTGGCCAAGAACCCGTCTGGTTGCTTTACTGTTGAGAAGTGCTTTACAGTGA
GTAATTTATCACTAAGAGAGGCCATAGCGTCAGACTTGGTAGCAGTTCAAGCAGAGCTGGAACATTCCAAGACAAAGCAAAGTCCGTACCTGTTAAGGAA
ACTGGATATTGATGGGTTTGGGAAGCGGCCTGATCAATGGAGATCGAAGCAAGAGTCAAAACAAGCTGCTTACAAGCATTTTTGTGCAGCATTTGGGAAA
ACTGAGGATGCAAGTAAAAAAGGATCATCAAAGATGGATGAAGACACGGGACTGGAGGAAGAAGATGACAATGCTGTTCTAGAGGATGGGAAGAAAGCAA
AGAAAAAGAAGAAGGTTGAAGCAGAGTCAGTGGCCAAAGCAACAGAGAGTGGAGGTCATGAAGAGAAAGTACCATTTCTATCGGAGGAGATGCAGGGAAA
GAAACGGAAGGGGAAGAATGGTCCCTCGAAACCTTGGAAGAAGATTAAGACATAA
AA sequence
>Lus10022388 pacid=23171716 polypeptide=Lus10022388 locus=Lus10022388.g ID=Lus10022388.BGIv1.0 annot-version=v1.0
MGRDNKFYKQGSREKGMGKKSASSFQRDDANNNSHGHAGTTKHHDSSSSTNPHHNVIRKEIDPETKTYFTEIANLFESSGIDLEERSVICSNALEEARGK
EFELATDYIISHTMQSLLEGCDVDHLCGFLRGCAELFPVIASDRCGSHVAETALKSLAMFVQDDANYSAIEETLSAICQVIAANPADMMCSQHGSHVLRT
LLCLYGGARLDSPEFHGAKSPSNLANRLNLQATHMPGTDSVHIHQGFPGLLKSFVSAMLKRNGEGILVDQCSSLVLQTALKLLAGNDEELSHVIPVLLGC
KNQNLTEGNLIDLSIVRKVVELMKETAFSHLMELSSDRCGNFVVQALISHTRDERQVKFIWEELGPKCKDLLEMGRSGVIASFIAASQRLHTSERECCQA
LATAVSAGSDESPRWIIPRILFLENYLRCEDKSSWGWPNGFRMHVMGSLILQAIFKFPAEFIQAYITSMTCMEVEHVLEVAKDGGGARVLEAFLDSAASG
KQKRRVISKLRGHFGELAKNPSGCFTVEKCFTVSNLSLREAIASDLVAVQAELEHSKTKQSPYLLRKLDIDGFGKRPDQWRSKQESKQAAYKHFCAAFGK
TEDASKKGSSKMDEDTGLEEEDDNAVLEDGKKAKKKKKVEAESVAKATESGGHEEKVPFLSEEMQGKKRKGKNGPSKPWKKIKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72320 APUM23 pumilio 23 (.1.2.3) Lus10022388
[exp]
0 1
AT2G25710 HCS1 holocarboxylase synthase 1 (.1... Lus10027084
[exp]
1.0 0.8864
AT3G14400 UBP25 ubiquitin-specific protease 25... Lus10005591
[exp]
2.0 0.8806
AT3G09850 D111/G-patch domain-containing... Lus10019584
[exp]
6.0 0.8517
AT2G21470 EMB2764, ATSAE2... EMBRYO DEFECTIVE 2764, SUMO-ac... Lus10028804
[exp]
6.0 0.8624
Lus10036475
[exp]
6.5 0.8181
AT4G31770 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHI... Lus10026902
[exp]
6.9 0.7854
AT1G28210 ATJ1 DNAJ heat shock family protein... Lus10020949
[exp]
7.1 0.7848
AT1G30620 MURUS4, HSR8, U... UDP-D-XYLOSE 4-EPIMERASE 1, MU... Lus10003496
[exp]
7.7 0.8221
AT2G36070 ATTIM44-2 translocase inner membrane sub... Lus10022930
[exp]
8.1 0.8457
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Lus10038817
[exp]
8.9 0.7983

Lus10022388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.