Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53920 304 / 7e-101 ribosomal protein L11 methyltransferase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005914 [exp] 317 / 7e-108 AT5G53920 166 / 1e-49 ribosomal protein L11 methyltransferase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116100 [exp] 382 / 5e-131 AT5G53920 341 / 1e-115 ribosomal protein L11 methyltransferase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06325 [flax] [poplar] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Lus10022389 pacid=23171759 polypeptide=Lus10022389 locus=Lus10022389.g ID=Lus10022389.BGIv1.0 annot-version=v1.0 ATGTCAGGCAGGAGTCATTTCTTCAAACACCTCTCCTGCAGTCTGAACCGCTCTTTCATCCATCGCCCTTCCCCTCTACTGCAGCTTCCCAGCATCACTA TCATCGGCCTCCAGTCTCCACTGCCACTATGGAAACCAGTATCATCATTTTCCTCAAACATTTATGCTACCACCACTAGTTCTTCTTCTTCTTCTTCTTC TTCTTTAGTTTCTGCAACATCATCTTCTGCTTCCACAACTAATCTCACCTCACCCGCTGGCGCTTACGGGAGTTACGTTTCTGTTCGGATTCGGTGTCCG CGAAATGCTTATGAATCGTTTTCAGATGCTTTACTGGATTTTGGAGCAAGTTCCACCACTGTGAACGATGAAGAAAATGAAAAAGGCGATAGTGAAGTGT CTGATGGCTTTAATGAGGTGGTTATTGATTCCATATTTCTGGAATGCCAAGATGTCAAAGCGTGCATTCTCGAAGCTGCTAATGCTGCTGGTTTGAATAA GACACCCGTCTATGATGTTAAGATGGGTGAACAGGATGACTGGGTTCGGAAATCTCTGGAATCCTTTGATCCAGTTGAAGTTACCGTGGGGCTTTGGATT GTACCCGAGTGGAAATCTCCCCCGAATGTTAATGCGACGAATATAATTCTAAACCCTGGAGTAGCTTTTGGAACTGGGGAGCATTCTACAACAAAGTTGT GTTTGCTACTGCTAAAAAGTTTGATCAAGGGAGGAGAATGTTTCTTGGACTATGGAACAGGTTCTGGAATTCTGGGAATTGCAGCACTTAAGTTTGGTGC TGCTACATCAGTTGGAATTGACGTGGATGAGCAAGCAATCACATCAGCGCGTAAAAATGCTGCTCTGAACAATATAGGACCCGAGACAATGAAGTTACAC CTAGTTTCTGGCAAAATGGATTCAGGGACAGACGAAGTTGTGAGAGGACAGAGCTCGAACGAAACTGGCGTGTTCCCGGAAATGGAAACATGTGATGTGG TCATTGCCAACATACTTCTGAACCCGCTATTAGAACTTGCAGACAACATTGTTTCTTTCGCTAAACCTGAAGCAGTTGTTGCTGTATCTGGGATTCTTTC TGAACAGGTGCCGCAAATTGTCGACAGGTACTCTCAGTTGTTGGAAAATCTGCAGGTTACAGAAATGGATGGCTGGGCTTGTGTAACTGGAAGAAAGATA GCTAAACCTCAAAGAAGCTGA
AA sequence Show only first row Show all	>Lus10022389 pacid=23171759 polypeptide=Lus10022389 locus=Lus10022389.g ID=Lus10022389.BGIv1.0 annot-version=v1.0 MSGRSHFFKHLSCSLNRSFIHRPSPLLQLPSITIIGLQSPLPLWKPVSSFSSNIYATTTSSSSSSSSSLVSATSSSASTTNLTSPAGAYGSYVSVRIRCP RNAYESFSDALLDFGASSTTVNDEENEKGDSEVSDGFNEVVIDSIFLECQDVKACILEAANAAGLNKTPVYDVKMGEQDDWVRKSLESFDPVEVTVGLWI VPEWKSPPNVNATNIILNPGVAFGTGEHSTTKLCLLLLKSLIKGGECFLDYGTGSGILGIAALKFGAATSVGIDVDEQAITSARKNAALNNIGPETMKLH LVSGKMDSGTDEVVRGQSSNETGVFPEMETCDVVIANILLNPLLELADNIVSFAKPEAVVAVSGILSEQVPQIVDRYSQLLENLQVTEMDGWACVTGRKI AKPQRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53920			ribosomal protein L11 methyltr...		Lus10022389 [exp]	0	1
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	7.7	0.7822
AT1G80380			P-loop containing nucleoside t...		Lus10018910 [exp]	11.2	0.8446
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028850 [exp]	13.0	0.8207
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	24.1	0.8345
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	27.8	0.8314
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	27.8	0.7482
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	29.2	0.7731
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	30.0	0.8042
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	32.3	0.8161
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	36.5	0.8287

Compare expression of checked genes

Lus10022389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.