Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53060 640 / 0 RNA-binding KH domain-containing protein (.1.2) AT5G15270 184 / 7e-51 RNA-binding KH domain-containing protein (.1.2) AT4G18375 139 / 8e-35 RNA-binding KH domain-containing protein (.1.2) AT1G51580 133 / 1e-32 RNA-binding KH domain-containing protein (.1) AT1G14170 124 / 3e-30 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 125 / 7e-30 RNA-binding KH domain-containing protein (.1) AT5G64390 113 / 8e-26 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT2G22600 99 / 1e-21 RNA-binding KH domain-containing protein (.1) AT3G04610 90 / 1e-18 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT5G09560 70 / 3e-12 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005915 [exp] 957 / 0 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 177 / 6e-47 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 168 / 5e-44 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10023300 [exp] 167 / 6e-44 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10005232 [exp] 161 / 3e-42 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 158 / 2e-41 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 155 / 5e-40 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10036767 [exp] 155 / 5e-40 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 148 / 2e-37 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011100 [exp] 770 / 0 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 758 / 0 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 190 / 5e-52 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 172 / 1e-46 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 167 / 8e-45 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 160 / 1e-41 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 152 / 3e-39 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 147 / 2e-37 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.007G116300 [exp] 147 / 7e-37 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.017G042500 [exp] 143 / 9e-36 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10022390 pacid=23171682 polypeptide=Lus10022390 locus=Lus10022390.g ID=Lus10022390.BGIv1.0 annot-version=v1.0 ATGGAGAGATCTAGATCTAAACGGAATTACTACTATGATAACCCGGACTACGACAATGACTCGACCGGTAGGACAAAACCTCGTTACAACAGCCATCACT ACTCTCCCGCCGCCGCCGCCGCCACATCCCCCCATAGCATTATTAAATCCATTAGGCAGCATACGGGAGCTTGGATCAATGTCCATGAGCTGATCCCTGG GGATGAAGAGAGAATCATTGAGATTTCTGATACGAGACGTAGGGACCCTGAAGGAAGAATCCCCCCTTTCTCTCCTGCCCAAGAGGCACTTTCCCTCATA CACGAGAGGATTCTCGAGAGTGATGCTGAGTTTGGTGGTGTGGGTGGCGGATATGGTAACGACGATGAGGAGTACGGCGGAAGAGGAGGGGGCGGCGGCG GCGGGAATACCAGAGTGGCTACTAGATTGGTGGTATCAAGGATGCATGTTGGGTGTTTGTTGGGGAAAGGTGGGAAGATCATTGAGCAAATGAGGATGGA GACAAAGACCCAGATTAGGGTTTTGCCTAGAGATCATACCTTGCCTCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGTTCTAGGTGATGCAAATAAT GTAAAAAGTGCTATTGCGATAATATCATCACGGTTGAGGGAGAGCCAGCATCGTGACCGCAGTAATTTCCAAGGGAGAATGCATTCTCCTGAAAAGGCTT TCCCGGATGATGATTATGTTCCTCACATGAATAATGCAGCTAGGCGGTCATCTGGTGATGGTCACTCTTTTGGACCACGAAGTTCGGGCACCAATCATAG AAGCAATAATTATGCTTCACGCATATCTGGATATGGTTTGGAATCTGGCTCTGCATCTTGCTCTGAACTTGTCTTCCGACTGCTTTGCCCAATGGGTAAG ATTAACAGAGTAGTTGGAGAGACAGATGGAATCTTGCAACTTCTTGAAAATGAGATTGGTGTAGACGTAAAGTTTTCTGATCCTGTGTCTGGGTCAGATG AACAGATCATCACTATATCATCTGAAGAGGGTCCTGATGATGAGTTGTTCCCTGCTCAAGAGGCCTTGTTACATATTCAGACTCGAATTGTTGACCTTGT TCCAGATCAAGACTCTGTTATAAAAACCAGGCTACTTGTACCAAATAGTGAAGTTGGTTGTTTGGAGGGAAGAGAGTCTTTGTCAGAAATGGAAAGAGTA ACTGGTGCAAAAGTACAGATCTTGGCAAAGGAGAAACTTCCTGCATGTGCATCAGGGGTTGACGAGCTTGTTCAGATAGAAGGGGAAATAAAATCAGCTC GAGAAGCTCTTGTCGAAGTGACATCGAGATTGCGAAGTTACTTGTACAGAGACTTCTTCCAAAAGGATACACCGCCTGTTTCTACTCATGGCTCTATTGG GAGGGGTTTACCAGCGGAAGCGGCTTCGTCAAATAACGTGACTCCTGGCGAAAGTCACAGTCCAGCTGAACCTTCTGCAGCATCCTATCAGACAGCTCAA CAAGCATCAACACCTCCATTTTCCAAGGATTCTGGTGGATCAGTTTCTGAAACAGCAAGGCAGAATGAAAGTGAAAGGCGTGAAGATGTGCCAGCTTCAA CGAACAGAATTCCTGTGACACTTGTGACTAGGAGCATTCTTGAAGTTGTTATACCTGAGTACGCAGTTCCCAAGCTGGTAGCAAAATCCAAAAACAAACT TACACAGATCAGTGAGTTGTCTGGAGCAAACGTTACTCTCTTAGAAGACAGTCCAGATGGGACTGAAAAGATAATCCGAATATCTGGTACGCCAGAGCAG GCAGAACGAGCCCAGAGCTTACTCCAAGGCTTCATATTGAGTACACAAGAAGATGGACCTTGA
AA sequence Show only first row Show all	>Lus10022390 pacid=23171682 polypeptide=Lus10022390 locus=Lus10022390.g ID=Lus10022390.BGIv1.0 annot-version=v1.0 MERSRSKRNYYYDNPDYDNDSTGRTKPRYNSHHYSPAAAAATSPHSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRIPPFSPAQEALSLI HERILESDAEFGGVGGGYGNDDEEYGGRGGGGGGGNTRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHTLPRCVSMSEEIVQVLGDANN VKSAIAIISSRLRESQHRDRSNFQGRMHSPEKAFPDDDYVPHMNNAARRSSGDGHSFGPRSSGTNHRSNNYASRISGYGLESGSASCSELVFRLLCPMGK INRVVGETDGILQLLENEIGVDVKFSDPVSGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLVPDQDSVIKTRLLVPNSEVGCLEGRESLSEMERV TGAKVQILAKEKLPACASGVDELVQIEGEIKSAREALVEVTSRLRSYLYRDFFQKDTPPVSTHGSIGRGLPAEAASSNNVTPGESHSPAEPSAASYQTAQ QASTPPFSKDSGGSVSETARQNESERREDVPASTNRIPVTLVTRSILEVVIPEYAVPKLVAKSKNKLTQISELSGANVTLLEDSPDGTEKIIRISGTPEQ AERAQSLLQGFILSTQEDGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53060			RNA-binding KH domain-containi...		Lus10022390 [exp]	0	1
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	10.1	0.7399
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	12.2	0.7074
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	30.3	0.7002
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026860 [exp]	66.8	0.6624
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	72.8	0.6255
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10021695 [exp]	84.1	0.6357
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	136.4	0.6112
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	137.7	0.6193

Compare expression of checked genes

Lus10022390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.