Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53050 502 / 3e-178 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 54 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 53 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 50 / 1e-06 ATSEH soluble epoxide hydrolase (.1) AT2G26750 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 47 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005918 [exp] 792 / 0 AT5G53050 494 / 6e-175 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10041790 [exp] 54 / 7e-08 AT3G51000 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 52 / 3e-07 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 52 / 5e-07 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037559 [exp] 51 / 8e-07 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 50 / 1e-06 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 50 / 1e-06 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 48 / 8e-06 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 47 / 1e-05 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017100 [exp] 560 / 0 AT5G53050 516 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.015G011300 [exp] 540 / 0 AT5G53050 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.005G081000 [exp] 58 / 4e-09 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 56 / 2e-08 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 53 / 2e-07 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 52 / 3e-07 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 52 / 3e-07 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 51 / 5e-07 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 51 / 6e-07 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10022392 pacid=23171655 polypeptide=Lus10022392 locus=Lus10022392.g ID=Lus10022392.BGIv1.0 annot-version=v1.0 ATGCCCTTTTGCGAGGTCTCCAAGTACCAGCACCAGGATCCCTCCAATTCCCCTTCTTCCCATGACAACATCAATGGCGGCCTCAAGATTTTTTACAGGA CCTATGGCCGCGGTCCAACCAAAGTTCTTCTCATCATTGGATTGGCGGGTACTCATGATTCCTGGGGTCCTCAGATTAAGGGCCTCACCGGCACCGTTTT CCCCAATAACGAAATTCATCCGGTTGACCTCGCCGACGACGACGATGACATCTCCGCCGATGGTTTCGAGGTTTGCGCTTTCGACAATCGTGGAATGGGT CAGAGCTCCATCCCCGTTGAACGATCCCAATATACAACGGCAATAATGGCCAAGGATGCAATTGCGTTAATGGATCATTTAGGCTGGAAAAAAGCTCACG TCTTTGGCCACTCAATGGGGGCGATGATATCTTGCAAGTTAGCAGCAATGGTGCCTGATCGAGTCTTGTCATTGGCATTGCTCAATGTAACCGGTGGTGG ATTCGAATGCTTCCCAAAGCTTGATCGTCGAACAATGTCAGTTGCTCTCCGATTCATGAAGGCAAAGACGCCCGAGCAAAGAGCTGCTGTCGATCTGGAC ACCCATTACACCAAGGAATATCTAGACGAAATTGTTGGCTCTACTACTAGGCGGCAGATTTTGTATCAAGATTATGTGAAAGGTATATCATCGACTGGGA TGCAGTGCAAATATGGGTTTGACGGTCAAATTAATGCATGTTGGACGCATAAGGTGACGAGATCCGATATAGAATCAATCCGCAGTGGGGGTTTTCTTGT ATCAGTCATTCACGGCAGGTATGACATCATTGCACAAATATATTATGCAAGGAGACTAGCTGAGAAGCTGCAGCCTGCCTCTAGAATGGTAGATCTCCAT GGTGGCCATCTAGTGAGTCACGAGAGAACCGAAGAGGTGAATCAAGCTCTTAAAGACTTGATAAAGGCTTCAGAAGCAGGAACTAGTCCACATGATTGGA CAAACATAGTCCAGGAGAGTTCCTCCGGTTGGCTGCTAGGGAGGATAACATCAACTGAGGGAAAAAGTAAAGGTTGTGTCGATCCCGGGTCTTCATCTGG AGTGTTTACGAGACTATATCCATGCTTTGTATATTTACTGAGTCTGTTTGCGTTGGTATTTGAATTCTTGACAAAAGCTCATAGAAGGATAAGACCAGCC AAGGTGGGACCTTCCCTCACGTAA
AA sequence Show only first row Show all	>Lus10022392 pacid=23171655 polypeptide=Lus10022392 locus=Lus10022392.g ID=Lus10022392.BGIv1.0 annot-version=v1.0 MPFCEVSKYQHQDPSNSPSSHDNINGGLKIFYRTYGRGPTKVLLIIGLAGTHDSWGPQIKGLTGTVFPNNEIHPVDLADDDDDISADGFEVCAFDNRGMG QSSIPVERSQYTTAIMAKDAIALMDHLGWKKAHVFGHSMGAMISCKLAAMVPDRVLSLALLNVTGGGFECFPKLDRRTMSVALRFMKAKTPEQRAAVDLD THYTKEYLDEIVGSTTRRQILYQDYVKGISSTGMQCKYGFDGQINACWTHKVTRSDIESIRSGGFLVSVIHGRYDIIAQIYYARRLAEKLQPASRMVDLH GGHLVSHERTEEVNQALKDLIKASEAGTSPHDWTNIVQESSSGWLLGRITSTEGKSKGCVDPGSSSGVFTRLYPCFVYLLSLFALVFEFLTKAHRRIRPA KVGPSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	0	1
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	4.2	0.9404
AT5G09960			unknown protein		Lus10006803 [exp]	6.5	0.9229
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	7.3	0.9450
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10009334 [exp]	7.9	0.9367
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	8.5	0.9366
AT4G21920			unknown protein		Lus10001143 [exp]	9.2	0.9410
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	10.0	0.9327
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	14.2	0.9448
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	16.4	0.9420
AT2G31090			unknown protein		Lus10017667 [exp]	16.9	0.9326

Compare expression of checked genes

Lus10022392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.