Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24310 244 / 6e-80 ABIL3 ABL interactor-like protein 3 (.1.2) AT3G49290 240 / 3e-78 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G42030 115 / 3e-30 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 91 / 6e-21 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005919 [exp] 344 / 1e-118 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10008737 [exp] 96 / 7e-23 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10002151 [exp] 96 / 8e-23 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10032421 [exp] 76 / 1e-15 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10043223 [exp] 66 / 8e-12 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 65 / 2e-11 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10023052 [exp] 62 / 2e-11 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10034928 [exp] 54 / 9e-09 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10023654 [exp] 56 / 1e-08 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016900 [exp] 305 / 1e-103 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.003G142800 [exp] 153 / 3e-44 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 147 / 5e-42 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.014G092300 [exp] 100 / 3e-24 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.002G165900 [exp] 99 / 6e-24 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.018G082600 [exp] 56 / 7e-09 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022393 pacid=23171663 polypeptide=Lus10022393 locus=Lus10022393.g ID=Lus10022393.BGIv1.0 annot-version=v1.0 ATGACAGCATCTACCATTTCTAGAGAAGCATCAAACTATGATGAGATTTCCATGCAGCAGAGTTTGCTCTTCTCAGATAGTCTCAAGGATTTGAAGAACT TGCGAACACAACTGTATACAGCGGCTGAGTACTTTGAGCTATCCTACACGAATGATGACCAGAAGCAACTAGTGGTGGAAACGTTAAAGGATTATGCAAT CAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCCGTAACATATAAAGTTAATGATATCTTGGATGAGAAAGTAGATGAAGTTACTGGAACCGAGTTC CGGGTGTCTTGTCTTGAACAGACGAATTGTGATGGGAACATGTGCATGGCTGGGGAGACAATGCAAGGTTCCATCCGCACTAAATCAAAATACCTAGGAT GCAGCTTCGATGATGAAGACGATTGGCGTCAGTTTAGCAATTCTGTTAGAGCAACCATTAGCAAAACACCACCAGCTTCAGTTAGCAAACCACCACCAGC TTCAGTAAGCAAAGGTGTTTCACCATCACCTTCTCCACGAATTCCTCAACGATCTTCAACATTTTCGTTTACCAGCACAATGAAAGAACTAGATAAACGA ACTGTTTCACCACACCGGTTTCCTCTTCTACGTTCTGGCTCCGTGTCAAGACCAACAACCCCGGCAACAAGTAGACCTACTACTCCAAGTGGTCCAGCGG GAAGAAAACGGTACCCATCAGAGCCACGGAAATCAATGTCAATGCGTATCCCTGCAGAGAAGAACTCCAAAGACATTGAGCATCACCCAAGCAAAAGCAA ACGGATTCTCAAGGCCTTGCTTAGTCGGCGCAAATCGAAGAAGGATGAGATGCTTTATACTTATTTGGACGAGTATTGA
AA sequence Show only first row Show all	>Lus10022393 pacid=23171663 polypeptide=Lus10022393 locus=Lus10022393.g ID=Lus10022393.BGIv1.0 annot-version=v1.0 MTASTISREASNYDEISMQQSLLFSDSLKDLKNLRTQLYTAAEYFELSYTNDDQKQLVVETLKDYAIKALVNTVDHLGSVTYKVNDILDEKVDEVTGTEF RVSCLEQTNCDGNMCMAGETMQGSIRTKSKYLGCSFDDEDDWRQFSNSVRATISKTPPASVSKPPPASVSKGVSPSPSPRIPQRSSTFSFTSTMKELDKR TVSPHRFPLLRSGSVSRPTTPATSRPTTPSGPAGRKRYPSEPRKSMSMRIPAEKNSKDIEHHPSKSKRILKALLSRRKSKKDEMLYTYLDEY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10022393 [exp]	0	1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	6.2	0.8074
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	7.8	0.8884
AT5G49530			SIN-like family protein (.1)		Lus10041724 [exp]	8.1	0.8395
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	23.4	0.8422
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	29.2	0.8026
AT5G65540			unknown protein		Lus10025712 [exp]	31.6	0.8303
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	32.7	0.8283
AT1G19310			RING/U-box superfamily protein...		Lus10016303 [exp]	32.9	0.7953
AT1G25210		AtLpxC5	lipid X C5, UDP-3-O-acyl N-ace...		Lus10021282 [exp]	33.8	0.8012
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	34.2	0.8376

Compare expression of checked genes

Lus10022393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.