Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G40129 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0523 [flax] [poplar] GAG-polyprotein PF03732 [flax] [poplar] Retrotrans_gag Retrotransposon gag protein
Representative CDS sequence Show only first row Show all	>Lus10022394 pacid=23171766 polypeptide=Lus10022394 locus=Lus10022394.g ID=Lus10022394.BGIv1.0 annot-version=v1.0 ATGAGAACAAGTGATGAGGATAGGGTCCTTTTGACCTTATCACTTCTTCAGGGAACTGCCTACAATTGTTGGCTCCCACAACCAGCCAGTTACCAAGACC CACCAGAGATCTTTTGGACTGACTTTCTGAGAGCTTTTAGAAACCAGTTCATACCTGCCCTGCCCAGAGGGATAAGCAACATGAGCATGATTAAGCAGAA ATGGGGAAGTCAAGGTCGGGAGTCCGTCGCTGAGTACACGGCTCATTTCAATCAACTCTTGCCATATGGTGGTCCCTGGTTTCAGGATCCAGTTGCACAG AGAGACCACTATCTTCGCAACTTAAGGACCCAAATCTACCATGGAAGCAGAGAAGAGGTGTATAACGCTGCAGTACATGTGGAGAGGGCTGAGCAGGCAC TGTATGAGGAAGGAAGGCGAATAGGGACATTGGAAAGAAGAGGACACCTAGCCAACTTGGAGAGCCGACACCTAGTTCCCAACCCAAAAGGAGGGTGA
AA sequence Show only first row Show all	>Lus10022394 pacid=23171766 polypeptide=Lus10022394 locus=Lus10022394.g ID=Lus10022394.BGIv1.0 annot-version=v1.0 MRTSDEDRVLLTLSLLQGTAYNCWLPQPASYQDPPEIFWTDFLRAFRNQFIPALPRGISNMSMIKQKWGSQGRESVAEYTAHFNQLLPYGGPWFQDPVAQ RDHYLRNLRTQIYHGSREEVYNAAVHVERAEQALYEEGRRIGTLERRGHLANLESRHLVPNPKGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022394 [exp]	0	1
					Lus10024141 [exp]	8.2	0.8536
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	11.7	0.8536
					Lus10020135 [exp]	11.7	0.7409
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	14.3	0.8536
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	15.2	0.7990
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	16.5	0.8536
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	16.9	0.7277
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	18.4	0.8536
					Lus10011605 [exp]	20.2	0.8536
					Lus10025268 [exp]	21.8	0.8536

Compare expression of checked genes

Lus10022394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.