Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53020 381 / 4e-122 Ribonuclease P protein subunit P38-related (.1) AT3G45900 87 / 5e-18 Ribonuclease P protein subunit P38-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018117 [exp] 1261 / 0 AT5G53020 410 / 4e-133 Ribonuclease P protein subunit P38-related (.1) Lus10034732 [exp] 88 / 6e-18 AT3G45900 264 / 3e-84 Ribonuclease P protein subunit P38-related (.1) Lus10033275 [exp] 86 / 2e-17 AT3G45900 268 / 2e-85 Ribonuclease P protein subunit P38-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016600 [exp] 410 / 6e-132 AT5G53020 464 / 8e-153 Ribonuclease P protein subunit P38-related (.1) Potri.015G012000 [exp] 377 / 2e-119 AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1) Potri.001G130100 [exp] 75 / 6e-14 AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022396 pacid=23171631 polypeptide=Lus10022396 locus=Lus10022396.g ID=Lus10022396.BGIv1.0 annot-version=v1.0 ATGGACGATGTAGATTGCGATGCTTCCAAGTGTGAAAAACTTTACCCAATTTGTTTCGGCGTATCTTGCGCTCTTTTCGCTCTCTCAAAAACCGACCAAC AACAAAATCACAACAATTCAGAACCAGTCACAAATCTGCTCAAGGGAACCGCCAGCTTACTAGGATTGCTGGTTTGGGAAATCCAGAGGAAAAATGAAGC TGAATTTCAAAAACGGAAAGACTTGTTCTTCAATCTTCAACTCAGGCTCAAGGCGGCTGAGCTGGAGATCCACGAGCTGAAGCAAATCAGACGAGAGGAC GCCAAGGCCAACGAGAAAGTCGTCGGGATCTTCGCCTCCCAGGAGCAGAGCTGGTTTAACGAGAGGAAGAAGCTCAGGCTTCACATTGGAGCTCTAATGA ACCAGTTGAGTAATTTCCACCAGGAAAAGGAAGCAACAGTTTCCGAATTTCACGGACGAATTCAGGAAATGGAGGGTTTGTTGGAGGGGAAGAACAAGGA GTTGGAGGAATTGGGGGAGAAGTTGAGGAGAGCTGAGGATGTTGAGAAGGAGTTGAGGGAAGTTATGAAGAAAGAAGCTCAAGAGCATTCCTCTGATTTG TGGAAGCACAAGACTGCATTTCTGGAGTTGGTTTCTAACCAGAGACAGCTTGAAGCTGAGATGGGTAGAGCCGTGAGGCAACTCGAGTCGAAAAGGTTAG AACTTGATTCTGTGATGGAACAGAAAGAGGAAGCCAATTCGTTGACGCAAAAGCTGTCTGGGGAAGTTGTGAAGTTGGGTAGAGATTTGGAGCAGAAAGA TTTGATCTTGTCTGCAATGTTGAGGAAATCTAAGGCTGATGTTGCTGAGAAGCAAATGTTGTTCAAGGAACTCAAGCTTTCCAAGGCTAAGCGGAAGCAA GCTTCAGTTCCTCCTGCATCGCTACAAGATGCCAAAGGTAGATTGCATTCGGCTGGCTATGTGTTTGAGTATGAGAATCCTGGGTTCTTGAATGAATCAG CTCATATGGTTTCTCCCTTTTATGATCGTTACTCCTCAGAAGGAAGGGCTGAATTAGCATCTGAAGTTCGGAGATTGGAAGGATGGGTTCGATCAGAAGC AGGGAAGTATGCAGCAGCAGTTGAGAAGAGGCATCATCTGGAGATTGAAGCTTTTGTGGAGCAGCTGAGGCTCAAAGATGAGAAACTGGAAGCCTTTCAA TGGAAGTCCATGAGCACAGAGATGGAATCCAAGAGGCTGCAATCTCACCTCGAATCAATTGACCAGGACATGTCACAGCTCAGGCATGCCAATCTGAAAC TGGAAGCTTCATTTATTAAGCAGCAAGTGATGTCACAATTAGAACAACATCAACAACATTTGGTGTCCAAGAACACTGCTATTAGTTCACCACCACAAGA TGTCATCGAACATCGTAAATTGGTGGGGCTAGATCATCAAACAGAAGTTGATGTTGAGGTTCATGAGGTTGTTGAGTCTCCTGAGAAGGAATTTGAGGAA GAGAAGCATGTAACCAACCAGGGTCCCGTTCGGGACGAGGGCAGCCCAAGTTCCATGGCAACAAGCACCAAAGCATTGGTGATCAACAACACAAATGGGA CTGCTCCTCCATTGAAGATGGATATTCATGCTCTTGGAATATCTTATAAGATCAAGAGGCTTAAACAACAGCTCCTGATGCTGGAAAGATTGACAGGAAA GCAAGAGAATGGAGAATATATAGGTGAACAACACGGGGTAAAGTACTTCTCAATGCTGATATCATTGCTCAATCGGCAAATCAGTAGGTACCAGACTCTC GAAGCAAAGACCGATGAACTCTGCAAGCGTATGGTTGACAATGGTGTGGTTGACAGTTCCTTGAGAAACTTGGAGAGAAGCAAAGGAGAGACCAAGACAC TAGAGCATTTTCTGGACGAGACATTTCAGCTGCAGAGGTACATGGTTGCAACAGGGCAGAAACTGATGGAAGTGCAGACCAAGATTGGTTCGGAACTTGT AGAAGTCCCCGAGGAGCTGAACAAGTCTGGAAGTAGCATCAACATGAAGAGATTTGCAGAGAATGTGAGGACATTGTTCCAGGAAGTTCAAAGAGGTATG GAGGTTAGAATCTCACGAATAATGGGGGATCTTGAAGGAACCTTGGCTCGCCAAGGCATGATACGTTTGAGGCGGTAG
AA sequence Show only first row Show all	>Lus10022396 pacid=23171631 polypeptide=Lus10022396 locus=Lus10022396.g ID=Lus10022396.BGIv1.0 annot-version=v1.0 MDDVDCDASKCEKLYPICFGVSCALFALSKTDQQQNHNNSEPVTNLLKGTASLLGLLVWEIQRKNEAEFQKRKDLFFNLQLRLKAAELEIHELKQIRRED AKANEKVVGIFASQEQSWFNERKKLRLHIGALMNQLSNFHQEKEATVSEFHGRIQEMEGLLEGKNKELEELGEKLRRAEDVEKELREVMKKEAQEHSSDL WKHKTAFLELVSNQRQLEAEMGRAVRQLESKRLELDSVMEQKEEANSLTQKLSGEVVKLGRDLEQKDLILSAMLRKSKADVAEKQMLFKELKLSKAKRKQ ASVPPASLQDAKGRLHSAGYVFEYENPGFLNESAHMVSPFYDRYSSEGRAELASEVRRLEGWVRSEAGKYAAAVEKRHHLEIEAFVEQLRLKDEKLEAFQ WKSMSTEMESKRLQSHLESIDQDMSQLRHANLKLEASFIKQQVMSQLEQHQQHLVSKNTAISSPPQDVIEHRKLVGLDHQTEVDVEVHEVVESPEKEFEE EKHVTNQGPVRDEGSPSSMATSTKALVINNTNGTAPPLKMDIHALGISYKIKRLKQQLLMLERLTGKQENGEYIGEQHGVKYFSMLISLLNRQISRYQTL EAKTDELCKRMVDNGVVDSSLRNLERSKGETKTLEHFLDETFQLQRYMVATGQKLMEVQTKIGSELVEVPEELNKSGSSINMKRFAENVRTLFQEVQRGM EVRISRIMGDLEGTLARQGMIRLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	0	1
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	3.7	0.8165
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	3.9	0.8051
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	4.5	0.8271
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033842 [exp]	5.3	0.8012
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	7.7	0.8131
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	9.5	0.8134
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10018022 [exp]	9.9	0.7606
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024352 [exp]	10.5	0.7590
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	12.6	0.7976
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	12.6	0.7927

Compare expression of checked genes

Lus10022396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.