Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52990 173 / 4e-53 SNARE-like superfamily protein (.1) AT4G27840 164 / 9e-50 SNARE-like superfamily protein (.1) AT4G10170 78 / 6e-17 SNARE-like superfamily protein (.1.2) AT3G54300 49 / 6e-07 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT1G33475 49 / 1e-06 SNARE-like superfamily protein (.1) AT2G32670 47 / 3e-06 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04760 46 / 6e-06 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT4G15780 45 / 2e-05 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33120 44 / 3e-05 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 44 / 5e-05 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002944 [exp] 51 / 3e-07 AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) Lus10034145 [exp] 50 / 7e-07 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10011870 [exp] 49 / 8e-07 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10043431 [exp] 49 / 1e-06 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10040611 [exp] 47 / 3e-06 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 47 / 4e-06 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 46 / 6e-06 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 46 / 9e-06 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 46 / 9e-06 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012300 [exp] 232 / 3e-76 AT5G52990 192 / 3e-60 SNARE-like superfamily protein (.1) Potri.012G016400 [exp] 227 / 4e-74 AT5G52990 200 / 2e-63 SNARE-like superfamily protein (.1) Potri.013G094900 [exp] 91 / 1e-21 AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) Potri.003G048600 [exp] 84 / 5e-19 AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) Potri.010G239900 [exp] 52 / 6e-08 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 51 / 1e-07 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.003G177700 [exp] 47 / 3e-06 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 47 / 4e-06 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 46 / 9e-06 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 45 / 2e-05 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022397 pacid=23171714 polypeptide=Lus10022397 locus=Lus10022397.g ID=Lus10022397.BGIv1.0 annot-version=v1.0 ATGATTTCAAATCCAGATCTAATCCTCTACGCTTGCATTGCCAAAGGATCCACAATCCTAGCCGAGTACGCTTCTCCATCGGACCCCACGATCGTCGAGG TCGCCCAGAGATGCGTCTCCATATCGCCGCCGCACCACTCCGCCTTCTCCCACACCGTCAAGAAGAAGACCTACACCTTCTTGATCGAATCCCCCTTCGT CTACTTCGCCATCTTCCATAAGGATCTCGCCAGGTTGGAATCCTCCTGGTTCATCGACCGTGTCAAGGTGTCCTTCCTCGACCTCGTCGCCTCCAAATCC GTCAAGGACTTCGGCGCCCTCACATCGCTCTGCTTCCAGGGCGATTTCTACCCGCAGTTCCGGGAGATTCTGGCGCTGGATTTGGACTTGGCGGATTCGT TGACCGGGTCGTCCAAGGATAGCCGGAACCCTAGCTTGGACTCGAACAAGGAGAAGAACGTGACGCGGCCGTTGTTGAGCAAGTCCGGGAAGGCTCTGAC GAAGAAGAAGAAGAGCTGGTCGTCGGAGTCGGCCGGATCGTTCGAGGAGAAGAGCCAGGATCTGACGGTGGAGAATAACAGGGAGTTTTCTGTAGCGATG ACGTCGAAGAGCGGAGGAGGAGGAGGAGGAGGGGTTTGCATGATGGAGAGCAAGCAGAAGGCGAAGCAGACGTGGAAGAAGCATGTATGGATAGTGTTGG CTTTGGATTTGGCTGTTTGTGCTATGTTGTTCTTCATGTGGTTGTGGGTTTGCAGTGGTTTCACCTGCATTGATGGATGA
AA sequence Show only first row Show all	>Lus10022397 pacid=23171714 polypeptide=Lus10022397 locus=Lus10022397.g ID=Lus10022397.BGIv1.0 annot-version=v1.0 MISNPDLILYACIAKGSTILAEYASPSDPTIVEVAQRCVSISPPHHSAFSHTVKKKTYTFLIESPFVYFAIFHKDLARLESSWFIDRVKVSFLDLVASKS VKDFGALTSLCFQGDFYPQFREILALDLDLADSLTGSSKDSRNPSLDSNKEKNVTRPLLSKSGKALTKKKKSWSSESAGSFEEKSQDLTVENNREFSVAM TSKSGGGGGGGVCMMESKQKAKQTWKKHVWIVLALDLAVCAMLFFMWLWVCSGFTCIDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	0	1
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	1.4	0.8832
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	2.4	0.8415
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10006852 [exp]	3.5	0.7898
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	4.5	0.7939
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	6.0	0.8500
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	7.7	0.7832
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	8.7	0.8067
AT4G17100			unknown protein		Lus10001086 [exp]	10.6	0.7856
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	12.0	0.7708
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	12.0	0.7940

Compare expression of checked genes

Lus10022397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.