Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24300 859 / 0 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT3G01180 496 / 1e-166 ATSS2 starch synthase 2 (.1) AT1G32900 331 / 6e-105 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G18240 239 / 6e-68 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 197 / 4e-53 ATSS3 starch synthase 3 (.1.2) AT5G01220 54 / 2e-07 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018116 [exp] 1240 / 0 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 473 / 7e-158 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 452 / 5e-150 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10008279 [exp] 344 / 4e-110 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 341 / 9e-109 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10028133 [exp] 239 / 1e-67 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 236 / 1e-66 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 235 / 3e-66 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 231 / 1e-64 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012400 [exp] 953 / 0 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.017G084100 [exp] 478 / 4e-160 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.011G152200 [exp] 340 / 4e-108 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 329 / 5e-104 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 239 / 2e-67 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 191 / 1e-52 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 195 / 2e-52 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 100 / 9e-22 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G097600 [exp] 56 / 8e-08 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G112600 [exp] 47 / 3e-05 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10022398 pacid=23171634 polypeptide=Lus10022398 locus=Lus10022398.g ID=Lus10022398.BGIv1.0 annot-version=v1.0 ATGGAGACTCTGTCACTCAGTCACTGTGTTCATCAATCCTTCTCCAAGGCCGAACCCGTCAAAAGTACCAGAGGTTCTACTAGGCCCGTCCTTGGTTTTG CTCACTTCTCCCGCACCAACAGTAATGCTCGCTTCCGATTGGTGGCCGCTGCTTCGGGTAAGGATTCCTCCTCCCCTCCATCGACTGTACCTGATAATCA GAAGAATGAGGATGATGCAGCAAAGAAAGGATTCTTGTTGGGAGCTGAGACCGACGCTTCTGGTTCCGTTGTTGGCTTCAATTTGACTTCTCACTCTCTC GCTGGGGATGCCGCCAGTCAACCTTCTGTAAAGGAAGTTGCTGAGAAGGTTGAGGAGATTGCTGGCACAGAAGGGACAGAAGAAGCTCTGACGAAAGTCG CACACAGTATTGTTTTTGTTTCTTCTGAAGCAGCACCATATTCAAAGACGGGTGGTCTTGGAGATGTTTGTGGTTCTTTGCCGATCGCACTTGCTGCCCG TGGACACCGTGTGATGGTCGTCACTCCTAGATATATGCATAGTCCTGAAAGCAAGACTTATGCCAGTGCTCTAGATGCAGACTGTAGAATCAAGATTTCA TGTTTCGGCGCAGAACAAGAAGTGGCCTTTTTTCATGAATACAGGGACAAAGTTGATTGGGTATTCGTAGATCATCCTTCTTATCACAGACCAGGAAATC CTTATGGAGATACCAAAGGTGCTTTTGGTGACAATCAGTTTAGGTTCGCTTTACTCTGCTACGCTGCATGTGAAGCACCACTAGTACTCCCTCTTGGAGG GTTCAACTATGGGGAGAAATGCTTGTTTCTTGTCAACGACTGGCATGCTAGCTTGGTTCCTGTGCTTTTGGCTGCTAAATATCGTCCATATGGTGTTTAT AAGGACGCTCGATGTATTCTTGTCATACACAATCTTGCACATCAGGGGGTAGAGCCCGCATCAACTTATGGTAATTTAGGCTTATCTCCAGAGTGGCATG GGGCATTGGGATGGGTTTTCCCCACATGGGCAAGGACCCACCCGCTTGACACTGGTGAAGCTATCAATATGCTTAAGGGTGCTATCGTGACATCAGACAG GATACTCACCGTTAGTAAGGGATATGCATGGGAAATAACAACTGTTGAAGGTGGTTATGGTCTTCAAGAGTTGTTGAGCAGTCGAAGGGTTGTTTTGAAT GGAATCACAAATGGCATTGATATCTGTGAATGGGATCCATCAAGTGATAAATTTACCAAATCCCATTATTCGGCTGATGATCTTTCTGGGAAGGTTCAGT GTAAGATGGCTTTGCAAAAGGAATTGGGTCTTCCTGTTAGACCCGAGTGTCCTCTGATTGGATTCATTGGGAGGTTAGACTACCAAAAGGGCATCGACAT TATTCGTTGGGCAATTCCTGAGCTTCTGCAAGATGATGTTCAATTCGTTATGCTTGGGTCTGGTGATCCCCTGTATGAGAATTGGATGAGAGAAGCAGAA GCTGTCTACAAAGACAAATTCCGGGGTTGGGTTGGATTTAATGTTCCGATTTCTCACAGAATAACTGCAGGTGCGGACATACTATTGATGCCTTCGAGAT TCGAACCCTGCGGACTTAATCAGTTGTATGCAATGAGATACGGCACTGTACCAGTTGTTCACGGCACAGGAGGTCTTCGAGACACTGTGCAAAAGTTCGA TCCATTCGCTCAGGAAGGTAAAGGTGATGGCACAGGGTGGACATTTGCTCCACTTACGAAGGATAGCATGTTATCGGCACTAAGAACGGCGGTAGAGACA TACAGGGATCACAAATCGTCGTGGGAAGGGATTATGAAGAGAGGTATGGAGAAGGACTACACGTGGGAGAATGCTGCGACACAGTACGAACAGGTCTTCG AATGGGCCTTCATTGATCCCCCTTACTGTTAG
AA sequence Show only first row Show all	>Lus10022398 pacid=23171634 polypeptide=Lus10022398 locus=Lus10022398.g ID=Lus10022398.BGIv1.0 annot-version=v1.0 METLSLSHCVHQSFSKAEPVKSTRGSTRPVLGFAHFSRTNSNARFRLVAAASGKDSSSPPSTVPDNQKNEDDAAKKGFLLGAETDASGSVVGFNLTSHSL AGDAASQPSVKEVAEKVEEIAGTEGTEEALTKVAHSIVFVSSEAAPYSKTGGLGDVCGSLPIALAARGHRVMVVTPRYMHSPESKTYASALDADCRIKIS CFGAEQEVAFFHEYRDKVDWVFVDHPSYHRPGNPYGDTKGAFGDNQFRFALLCYAACEAPLVLPLGGFNYGEKCLFLVNDWHASLVPVLLAAKYRPYGVY KDARCILVIHNLAHQGVEPASTYGNLGLSPEWHGALGWVFPTWARTHPLDTGEAINMLKGAIVTSDRILTVSKGYAWEITTVEGGYGLQELLSSRRVVLN GITNGIDICEWDPSSDKFTKSHYSADDLSGKVQCKMALQKELGLPVRPECPLIGFIGRLDYQKGIDIIRWAIPELLQDDVQFVMLGSGDPLYENWMREAE AVYKDKFRGWVGFNVPISHRITAGADILLMPSRFEPCGLNQLYAMRYGTVPVVHGTGGLRDTVQKFDPFAQEGKGDGTGWTFAPLTKDSMLSALRTAVET YRDHKSSWEGIMKRGMEKDYTWENAATQYEQVFEWAFIDPPYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	0	1
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	1.0	0.9051
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10043129 [exp]	2.8	0.8610
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	3.5	0.8895
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	4.6	0.8683
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	6.9	0.8732
AT1G27070			5'-AMP-activated protein kinas...		Lus10036706 [exp]	7.3	0.8141
AT2G21960			unknown protein		Lus10006822 [exp]	7.4	0.8563
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	8.1	0.8497
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	10.4	0.8309
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	11.2	0.8744

Compare expression of checked genes

Lus10022398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.