Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49260 208 / 9e-62 IQD21 IQ-domain 21 (.1.2.3) AT3G22190 72 / 2e-13 IQD5 IQ-domain 5 (.1.2) AT2G26180 62 / 2e-10 IQD6 IQ-domain 6 (.1) AT5G03040 59 / 5e-09 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 56 / 4e-08 IQD1 IQ-domain 1 (.1.2) AT3G52290 55 / 5e-08 IQD3 IQ-domain 3 (.1) AT4G00820 50 / 2e-06 IQD17 IQ-domain 17 (.1) AT1G01110 47 / 3e-05 IQD18 IQ-domain 18 (.1.2) AT1G72670 45 / 8e-05 IQD8 IQ-domain 8 (.1) AT4G10640 45 / 8e-05 IQD16 IQ-domain 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018115 [exp] 652 / 0 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10026486 [exp] 74 / 6e-14 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 71 / 9e-13 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 61 / 2e-09 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10041419 [exp] 57 / 1e-08 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 56 / 2e-08 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 56 / 7e-08 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10004107 [exp] 55 / 9e-08 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10013522 [exp] 55 / 1e-07 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012500 [exp] 313 / 3e-102 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3) Potri.012G016200 [exp] 300 / 3e-97 AT3G49260 215 / 2e-64 IQ-domain 21 (.1.2.3) Potri.001G215200 [exp] 73 / 1e-13 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 70 / 1e-12 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.001G448100 [exp] 63 / 2e-10 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.006G226600 [exp] 62 / 5e-10 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.010G218100 [exp] 61 / 8e-10 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.014G104600 [exp] 60 / 3e-09 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.016G086300 [exp] 57 / 2e-08 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.002G178500 [exp] 54 / 2e-07 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10022399 pacid=23171653 polypeptide=Lus10022399 locus=Lus10022399.g ID=Lus10022399.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGAGCGGCGGCGGCGGCGGTGGATGGTTCTCTTCAGTCAAGAAAGTTTTCAAATCATCACCAAAGGATTCTTCGCCCCAGAAAAAGAAGG AGAATAATAGTGGCGAGAAATGGCAGCACCACCGTGATGCCCCTGAGGTTGTATCATTTGAGCATTTCCCAGCTGAGAGTTCCCCTGATGTCACAAATCA AGGGAGCCGTACGGCAACGTCCCCTGCTGCTTCTGAAGACAGAAATCACGCCATTGCTGTTGCTGCCGCCACAGCTGTTGCTGCACAAGCCGCAGTTGCA GCTGCCCAAGCTGCTGCTAAAGTGGTTCGATTGGCTGGATATGGTCGCCAGTCCAGAGAAGATAGAGCTGCTACCTTCATTCAATCACACTACCGAGGCT ACCTTGCTAGGCGTGCCTTGCGTGCATTGAAAGGATTAGTGAGGTTGCAAGCATTGGTAAGAGGCCATAATGTGCGGAAACAAGCGCAAATGACGATGAG ATGCATGCAAGCGCTTGTTCGAGTACAGGCTAGAGTAAGAGCCCGGAGGATGCAGCTCACTCACGATAAGAAAGACCAACCGAATGAAGATGCGTATCAA GACCGAGACACGAATCAAAGGAGTCCATTGAAGAAGAGTTATATGGTTGAGAGTTGGGATAGCAGGCGCCAACTATTCAAAGACAAGGAAAATGCTCTCA AGAAACATGAAGCCGTCATGCAAAGAGAGAAGGCTCTTGCTTATGCTTATGCTTCTCAGCAGCATCAAGAGCAAATATCACAGCCCAGCCCAAACGGAAT GGACTTGGGCCTTTACCCTGACGAGCAAGCAAAAGCCCAGTGGGGTTGGAACTGGCTAGAGCATTGGGTATCTCACAACGGCCGTCGTTTCGGCCCAACT GACCGCTCCTACGTAACATTAACCACCACCACAACCACCACCGATGACATGTCCGAGAAGACTGTCGAACTTGACGTCGTTACTCCAACCAAGTTTTCCA GCAATGGCACCGAGAACGTCAGCATAGGCGTCATGGACACAGGCAGGAGCGATGTGTATTCGGCTCGGTCCAGAAGACAACCTTCCACCCCAAACAATGT CCCAAGTTACATGGCCCCAACCCATTCAGCTAAGGCCAAGGTCCGGACCAATTTGGGCCCAGTGAAGCAAACCAGCCCATATACGCCTCAGTGGAACTCG TCAACAAAGAGGGAACAAATTCTTGGGTCGTCGTCAGTTTGTGACTCCTCTAGCTCCGGTGGAGGCACGTCCATTTACCATGTTCCGAAGAGCCCAAACC CTAAGGGTACGTCGATGCACTCTTTCTCTAGACGGCTGCCGGGGGACTATAGCCCGGATTCTAGAGGTGGCGCTGACGAATGGAGGCTTCCGACGACCGA GGGCCACCGCTGGAGGCATGATTTTGGGTGA
AA sequence Show only first row Show all	>Lus10022399 pacid=23171653 polypeptide=Lus10022399 locus=Lus10022399.g ID=Lus10022399.BGIv1.0 annot-version=v1.0 MGKKSGGGGGGWFSSVKKVFKSSPKDSSPQKKKENNSGEKWQHHRDAPEVVSFEHFPAESSPDVTNQGSRTATSPAASEDRNHAIAVAAATAVAAQAAVA AAQAAAKVVRLAGYGRQSREDRAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRMQLTHDKKDQPNEDAYQ DRDTNQRSPLKKSYMVESWDSRRQLFKDKENALKKHEAVMQREKALAYAYASQQHQEQISQPSPNGMDLGLYPDEQAKAQWGWNWLEHWVSHNGRRFGPT DRSYVTLTTTTTTTDDMSEKTVELDVVTPTKFSSNGTENVSIGVMDTGRSDVYSARSRRQPSTPNNVPSYMAPTHSAKAKVRTNLGPVKQTSPYTPQWNS STKREQILGSSSVCDSSSSGGGTSIYHVPKSPNPKGTSMHSFSRRLPGDYSPDSRGGADEWRLPTTEGHRWRHDFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	0	1
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	2.0	0.9787
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	2.4	0.9755
AT1G61100			disease resistance protein (TI...		Lus10032661 [exp]	2.4	0.9696
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	2.8	0.9778
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	4.9	0.9648
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	8.9	0.9738
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	9.2	0.9494
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	9.7	0.9575
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	9.9	0.9626
					Lus10011724 [exp]	11.8	0.9704

Compare expression of checked genes

Lus10022399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.