Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24280 1194 / 0 GMI1 gamma-irradiation and mitomycin c induced 1 (.1) AT3G49250 176 / 2e-47 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018114 [exp] 176 / 5e-51 ND 47 / 3e-07 Lus10023253 [exp] 178 / 4e-48 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 166 / 1e-44 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 164 / 4e-44 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 140 / 3e-36 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 141 / 1e-35 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016100 [exp] 1134 / 0 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1) Potri.015G012600 [exp] 187 / 4e-51 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 184 / 3e-50 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.002G172000 [exp] 154 / 1e-40 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022400 pacid=23171753 polypeptide=Lus10022400 locus=Lus10022400.g ID=Lus10022400.BGIv1.0 annot-version=v1.0 ATGCCAAACAAGAGCGCGAAGAGGAAGCTGATCCTCAATGATGATGAAGATGATGATATCAGAGTATACAAATTTAAGGTCTTACTTCCAAATGGGTTGA CCGTCGAGTTGAGACTGGAAAACCCTGCACCCCAGTTGTCACTGGAGAATTTCGTGAAGTTGGTGCAAGAACAATGTGCTATACAGCTCAGGGAATCAAG AGTTAGACCCACTAGCAATGTTGATTGGAAATCTGGATCGCTATACTTTGTGGATTCGCAAGACAGAAAAATCAAGAAGATCAACTTTATGAATTATAGG CCCTACAAATGCCATGTCTTACGTCTCTACGATGGAAGCTCGAGCACCAGTAGGACTTATGAGAATATGTGGGACCTCACACCTCATACAGACATACTGA AGGAGTTACCAGAAGCGTATGATTTTGAGTCTGCACTTGCTGATTTGATTGACAATTCCTTACAAGCAGTTTGGTCCAACGGTGCTAATGATAGAAGATT GATTAGTGTGGATATCGTGGAAGATAGGATTTCTATTTTTGATACTGGCCCTGGAATGGACAGTACTGAAGATAATTCTATTGAAAAATGGGGTAAGATG GGTGCCTCACTTCATCGATCGTGGAAGGAACTTGCAATAGGGGGTAGGCCGCCGTACTTGAGGCCTTATTTTGGCATGTTCGGATATGGAGGGCCCATTG CATCCATGCATATGGGGAGGAAAGCTGTGGTCTCCTCGAAGACAAAACGGTCAAGTACAGTATATACATTACATCTGCAGAGAGAAGCTTTGCTCAAGAA ATCTAACTCCGAACAATCATGGAAGACTACTGGTGGAACAAGGAATCCTTCAGAAAACGAAGTTAAGGAATCACCTCACGGAAGCTTTACAAAGGTTGAG ATATCTGAGCTCAAACTGAAAAGGTTGAAAGTAACTCAACTCCGGTGCAAGCTAAAGGACATCTATTTTCCTTATATCCAGTGTGATGAAATGTCTGGGA AAACGACAAGACCAATTGAATTTGTGGTTAATGGTACCGATTTAGCAGAGATAACCAGTGGGGAAGTGACAGTTACAAACTTGCTATCTTGCAACGGGCC TGAATTTGTCTTTCAGCTTAAATTTGCTGCAAGAAGGAATCCAGGTTTTACTCCTCTTGAAGCTAATGCACGCTTGAAGTGTGTTTATTTTCCGTTTTCT GAGGGAAAAGAAAATATTGAGAGGATCTTGGAGAATCTGGAAGAAGAAGGGTGCGGTATTAAGGAAAATTTTAATACATTCAGTCATGTATCAATTCGAC GACTTGGGCGTCTACTTCCTGATGCTCGCTGGGGTGTTCTTCCTTTCATGGAATATGCGCAGAAAAGGGGAGATAAAGCTCGTTTGTTGAAAACATGGTT CTCCAGGGTGAAATGCTTTATTGATACTGATGCTGGTTTCAATCCAACTCCTTCAAAGACGGATCTAGCTCAGCATTGCGTGTTTACTGCTGCTTTGAGG AACTTGGGAAGCAAGGCTGATGACGAAGGACAAGATGTCCAAATTGAAATCTCTCTGAATGGTAGAAGATGCAATATTTCACATCTCGAGAAGCAGTATC AAGAGTGGATTCTTCAGATGCATGAGCGTTATGATAAAGAGATAGAAGCAGGTGAGGATGATCCAGTGATGGTGGTCTCCCCGCCAAATAAAAAACAACT TGGCATTTCATCTGATGTCTTCAGGGTACATAGGATTTTGCATCGAAAAGGAGCATCATGGAAAGCTGGTCAGAAAATCAAAATTTTGAAGGGAGCAGCT GCAGGATTCCACAAAAATAATGTATATGCGACATTAGAATACTTTTTGATTGAAGGGATGCATGGGGATGCTGGTGGTGATGCTCGAATTATATGCAGAC CATTGGACGTTGAAGAAGAGAAAGGCTCTCAGCTTGTTGTTAACAACGGAGATGCCAGTCTCGAAATTGATAATTCTCTTAGCGTTCCTATTAATGTCAT CGACAATGGAAAGTGCGTAGCAGTTGGAAGTGCCGAGTGGGCAACCCAGCTTGAGAAGAAACGCCTAAAAGCTCCTTCTTCAATAAGCTTACTCTGCCTA GCACAGTGTCGAGAGTTGGATATAAATGAGGCATTGCCTGTTAATGGTACAATCGACGCTGGACAAGTTCCTCCAAGAGAACTTGTTGCGGTAGCTCGAC CAGCAAGCTACAATTCAGAAAATACACTGGATCAGAAATATATAGCCCAGACTTCTGCTCAAATGAGTATGGTAGTTCAGTCCAGCAGCAAGGGCAAAAT TCATGAGAATGCTCATCTATATTCATCTCTAGTCTCTCCAACTTCTCGTAAAGGTGTAAATGGTTTATATATCTTCCGACTGCCTGACAAGTTGCAAGAT TTATTCAAGAAAGCTGGCTTGTACACCTTTTTATTCTCCCTCACTGACTCCAGTTGTAAGACGTACGAGAGAAAGGTTGCCGTCATAGCATCCTCTGAGT CAGATGTCAGAAAATGGAAGTTGCTGGCTGGTGGACGAAATCAATCACATTCAATTCGCCTAGGTACATCATTTCCAGAAATCAAGATCGGATGCTTTGA CGCATACGAAAATCAGATTCCATTTACAAGTGTACCCAGATTGACTATCAGGCTACTTCGACCGGAGAAAGAGGATGTTATCCGACATGTTCAGAATTCG ATGGTGAACCTCTCCTCTAACAAGACTGTCCTCGGAGTCAAGAACTTGGTCATAGAAAACATCCAACTGGATATAATTAGACCGAATTTTCTTGCCACAT TGCACATTGCAGCCACAAATGATGATCTTTCAGTTTCCATCCCTTGTAAAGTTACCCCTGGTCTGCTTAAGGTTGTTAAGGCTGGAGTACCTGTTAGTGA AGGCTTGCTTCCTGGTTCAGTGCTGAAGGATTTTTCGTTGGAGATGTTTGACGCCTATGGTAATCACGTGATAGAAGGGTCAGAAGTCGGGCTACGTGTT GATGGACTTGAAATTATTGATCACAGTGGCCGAAAGCGTACAGTGGATGCTAATGGGTTTATCAACCTAGGTGGTGTCTTGAAAGTGACAGCTGGTTTTG GGGAAACCGCTTCAATATATGTTTCATCTCAAAGCAATGTGCTTTATTCAAAGGAGTTTCAAATTGACCCAAGGATGCTTGAAATCGTGTCAAAGGTGCC GTCATTCTGTTATGCTGGCTCTCGGCTTGAAAACCTTGTCTTTAGAGTGGTGAATTCTAGTGGTGACATTGAGAAGAGCATCCATGATGATTTGGAGAGT GGACAAGCTCACACACTTTCACTTAGATATCCATCCAATACAGAGGATTCTGTCCGATATGCATTCAACTACGGATTCTCCACTGTACCAAGTATACAAA TCCCTACTATTGAAGGGAGCTTATGTCTCACAGCATCTCACTCTCGCTACCCACTACTACAATGCTACATTTCAATTGAGGTCATCACGGCTCCTGAGGC TGAATGCAAAATGATCCAATCTTCATTTCCATCTCCATCATCGAATGGGAAGCATCACTTGACTGAATACTATTCCTCTTGTACGAATGTACAAAAGTTA GCTTTGGCTAATCCAGCGGGTGAGAAGAAAATACTTAATGATGTTTGTACGCTCGGGAAGCTTGTTGGAGACTTGGAAAGTGCACTGAATCAATTACGTA AGCAGAAGGAAGAAATAGAGCAAGAGATTTCACAACTTGAAGAATCTGCCAAAGATCACTCTCTCAGTATAGTGGACTGTCTTCTTACGAAGGAGGAAGT TGAAGAAAGAATAGAGAGGAGTAATTCCGCGTCTGCTATAGTCAGTCATCTATCCAGATACCAATCAAACCCAACAGAAGAACCACATTTTAGTGGAGAT ATTATTGGCCTGGTTGTGCAACTTGGGACAGTAAGCACTAGCAAGCTAAGCAGTCTTCGGGCTTATGTCCTCACCAGAATATTAGCAGAGTACTTGGGAG AAGATCAGATGCTTGCCGTGGTTTGTAGATCGTTTAGTGAAGCAATCACTACCCTTGAGAAGTATAGAGAAAATGGGGATATTGATCTCGAGTCTGGTGT TCACGCACAAGCAACTGCTCTAGGAAGATCCATAAATGGAAGATTCAATATTATATGCCTCGAAGATTTGTGCCCTCAAGGGAGGCTGAAACTAGATCCG CCTATGATGCCTAATGGGGAAACGAGACCTGGTTTCGTAGGGTATGCAGTAAATATGGTTGACATAGAGAGAAACCATATAGAAACAAAGACTGCTGGAG GATATGGGCTGAGGGAAACACTATTCCACCACCTGTTTGGGAAACTTCAGGTCTACGAAACCAGAGAGCTGATGTACTACGCAAGGGAGCATCAGCATAT TGGCAAGGAAGGTGCCGTCTCTTTGGATGGTGGGATATTGAGAGCAAACGGAGTGGCTTCTCTTGGACAAAGGGAGCCGTCGATTTGCTTCCCGGTTGTA ACTTCAGGACGTGACGAGACGTGCTTAACGATAGCGAACGATGTGCGTGGTTTGAAGGCCAAGCTGGAAGAGAATGCGAGAGAGATGGAGGCTTTCATGG AACAGCATGCCAAAGCTGTGAAGAAGTTTAGAAGGCAAAATGAGAAGAATTTGAGACGTCTGTCTCAGTAA
AA sequence Show only first row Show all	>Lus10022400 pacid=23171753 polypeptide=Lus10022400 locus=Lus10022400.g ID=Lus10022400.BGIv1.0 annot-version=v1.0 MPNKSAKRKLILNDDEDDDIRVYKFKVLLPNGLTVELRLENPAPQLSLENFVKLVQEQCAIQLRESRVRPTSNVDWKSGSLYFVDSQDRKIKKINFMNYR PYKCHVLRLYDGSSSTSRTYENMWDLTPHTDILKELPEAYDFESALADLIDNSLQAVWSNGANDRRLISVDIVEDRISIFDTGPGMDSTEDNSIEKWGKM GASLHRSWKELAIGGRPPYLRPYFGMFGYGGPIASMHMGRKAVVSSKTKRSSTVYTLHLQREALLKKSNSEQSWKTTGGTRNPSENEVKESPHGSFTKVE ISELKLKRLKVTQLRCKLKDIYFPYIQCDEMSGKTTRPIEFVVNGTDLAEITSGEVTVTNLLSCNGPEFVFQLKFAARRNPGFTPLEANARLKCVYFPFS EGKENIERILENLEEEGCGIKENFNTFSHVSIRRLGRLLPDARWGVLPFMEYAQKRGDKARLLKTWFSRVKCFIDTDAGFNPTPSKTDLAQHCVFTAALR NLGSKADDEGQDVQIEISLNGRRCNISHLEKQYQEWILQMHERYDKEIEAGEDDPVMVVSPPNKKQLGISSDVFRVHRILHRKGASWKAGQKIKILKGAA AGFHKNNVYATLEYFLIEGMHGDAGGDARIICRPLDVEEEKGSQLVVNNGDASLEIDNSLSVPINVIDNGKCVAVGSAEWATQLEKKRLKAPSSISLLCL AQCRELDINEALPVNGTIDAGQVPPRELVAVARPASYNSENTLDQKYIAQTSAQMSMVVQSSSKGKIHENAHLYSSLVSPTSRKGVNGLYIFRLPDKLQD LFKKAGLYTFLFSLTDSSCKTYERKVAVIASSESDVRKWKLLAGGRNQSHSIRLGTSFPEIKIGCFDAYENQIPFTSVPRLTIRLLRPEKEDVIRHVQNS MVNLSSNKTVLGVKNLVIENIQLDIIRPNFLATLHIAATNDDLSVSIPCKVTPGLLKVVKAGVPVSEGLLPGSVLKDFSLEMFDAYGNHVIEGSEVGLRV DGLEIIDHSGRKRTVDANGFINLGGVLKVTAGFGETASIYVSSQSNVLYSKEFQIDPRMLEIVSKVPSFCYAGSRLENLVFRVVNSSGDIEKSIHDDLES GQAHTLSLRYPSNTEDSVRYAFNYGFSTVPSIQIPTIEGSLCLTASHSRYPLLQCYISIEVITAPEAECKMIQSSFPSPSSNGKHHLTEYYSSCTNVQKL ALANPAGEKKILNDVCTLGKLVGDLESALNQLRKQKEEIEQEISQLEESAKDHSLSIVDCLLTKEEVEERIERSNSASAIVSHLSRYQSNPTEEPHFSGD IIGLVVQLGTVSTSKLSSLRAYVLTRILAEYLGEDQMLAVVCRSFSEAITTLEKYRENGDIDLESGVHAQATALGRSINGRFNIICLEDLCPQGRLKLDP PMMPNGETRPGFVGYAVNMVDIERNHIETKTAGGYGLRETLFHHLFGKLQVYETRELMYYAREHQHIGKEGAVSLDGGILRANGVASLGQREPSICFPVV TSGRDETCLTIANDVRGLKAKLEENAREMEAFMEQHAKAVKKFRRQNEKNLRRLSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Lus10022400 [exp]	0	1
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036670 [exp]	2.6	0.7095
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	6.6	0.7644
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	12.8	0.7594
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	14.3	0.7363
					Lus10027352 [exp]	16.1	0.7125
					Lus10027118 [exp]	17.5	0.6655
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	19.4	0.7222
AT4G00525			unknown protein		Lus10037852 [exp]	20.5	0.6579
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	21.4	0.7020
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	23.3	0.7186

Compare expression of checked genes

Lus10022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.