Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01110 281 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 265 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 263 / 7e-79 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 266 / 6e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63130 259 / 4e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 261 / 5e-77 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 258 / 9e-77 RPF2 rna processing factor 2 (.1) AT3G09060 257 / 6e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 261 / 1e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 253 / 4e-75 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018113 [exp] 1315 / 0 AT5G01110 293 / 3e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 275 / 2e-81 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 266 / 2e-78 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 264 / 6e-78 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 256 / 2e-75 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008650 [exp] 258 / 4e-75 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036020 [exp] 249 / 6e-72 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 250 / 1e-71 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 246 / 3e-71 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052800 [exp] 822 / 0 AT5G01110 273 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 286 / 1e-86 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 283 / 3e-85 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 274 / 3e-83 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 271 / 6e-82 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 278 / 5e-81 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 270 / 3e-80 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 270 / 1e-79 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G234500 [exp] 268 / 2e-79 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 266 / 5e-78 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022401 pacid=23171746 polypeptide=Lus10022401 locus=Lus10022401.g ID=Lus10022401.BGIv1.0 annot-version=v1.0 ATGGGTTATGAGGCTCTTGGTATTTTAGCGAGGATGAGGGACGCTGGTGTTAAGCCGAGTCCGTCTGCTATCACCATCTTGTTCAAATTTTTGTTCAAAG TTGGTGATCTTGAGGGTGCGTTGATATTTTTCAGGGACATTGTTAGGATAGGATGTCAACCTGATAATTACAATATCAACACTATTATTCATGGTTTTTG TCAGAGAGGGCATGTCAGAGTTGGGGAGAGTCTGTTGTATATAATGCAGAAATTTCGTTGTCAACCGGATGTTTATACATACAACATTTTGATCAACGCG TATTGTATGAGGGCACAAACTTCTGAGGCACTTTGTTGGTTAGATTCCATGATTCGAAGTGGCTGTAAGCCAACTGTATCTACAGTGAACACTGTAGTGA ACGCATTCTGTAGTAAAGGAAAGGTAGAAGAAGCAAGAAAGATATTTGACGGGATTCACGAGTTGGGTCTTTCTCCTAATATCTCGATATTTAATACAAT GTTGAATGGATATCTGAAGGCAAAGGACGTTGATCGAGCAAATATGCTTTATGATGAAATGAAAAGCTCTGGCATACCACCTGATGGTGTGACATTCAAT ATTTTGGTTGCTGGATATTATAGGTATGGAAGAGGAGAGGATGCTGACCGCTTGTTGACAGATTTGTCGGTTTTGGAGTTTGTTCCACCTTCTGCGCTAA ATGATATTACCATTGCAAGGCTGTGCTGGGCAGGGCACTTAGATAAAGCAACTCAACTCCTGAAAGATATCCTTCAAAAGGGAGTGTGTGTAAGTATTGT TGCTTTCAACTCTGTCATTGTTGCATGTTGCCAACTTGGAGAAGAAGAGAATGCCTATGAAACTTACAAACTCATGGTCAGTTTCGGTATATCTCCTTCT TCTTTAACATGCAGTTCATTACTTATGGGCTTATCCATTAAGGGCCAATTGCAGGAAGCGACAGAACTTTTGCATAAAATGATTGAAAAAGGATTTCACA TTGATAGAAAAGCTTTTACAGTGATCCTGGATGGATATTTCAAGACAGGGGATGTAGATCGGGCTTGCAGTCTATGGAATGAAATGGAAAGTATGGGTAC ATGTTTTGATGTTGTTGCCTATTCGGCTTTCATTGATGGCCTTTCTAAAGCTGGCATGATGGAGGAGGCATATAGTGTATTCTTGGAAATGTCGGTGAAA GGATGCATCCCTAACGTTTTTACGTACAACTCCTTGATTGTTGGATTTTGCAACTCTGGGAACCTTAATCAAGCACTACAGCTGGAGAGAGAGATGAGGC AAAAGGGCTTTCATCCAGACATTTTCACAATTAATATCATCATTAATGGGTTCTGTAATTTAGGAAATATGAAGCTTGCTGAGGATGCAGTTGCAGCCAT GTTTCAATATAGCCTGACCCCTGATATTGTCACATACAACACTTTGATCGGTGGATATTGTAAGGCATTTCAAATGGTCCATGCAGATGAGGTCGTGAAG AAAATGTATGCCGGTGGATGGGAACCAGACATCACCACATATAACATCCGGATTCATGGATTCTGTAGTAATCAAAAAATGAATCGAGCTGTTTTCTTGT TGAATGAGTTGATTACAATGGGTATTGTCCCAAACACGGTGACATACAACACAATGATAAAAGGTGTTTGTATGGATGTTCTGGATCGTGCGGTAATCTT GTCTGCTAGACTTCTTAAATTAGGGTTTGCTCCAAATGTTAGTACTATAAATACATTATTGTCTCAGTTTTGTAGGCAAGGAATGCCTGAGAGGACCTTA ATGTGGATACAGAAATTGAGAGAGGTTCCACTTGCTCTGGATGAAATTTCTTATAAGATTACGGACAGAGCTTATAGCAATATCCAGAAGGAAGCTGAAG TTGCAAGGGCAACATACGAAAAGAGCCTCTTTCTGGATTTCCTCATGTACATCACTTATGATTATTTATGCAGGAATATATCTCAGGCTCAGACGATCAC TAATGAGGATCCTCCTAAACTAGCTGCTTGTATTGGAGTTTGA
AA sequence Show only first row Show all	>Lus10022401 pacid=23171746 polypeptide=Lus10022401 locus=Lus10022401.g ID=Lus10022401.BGIv1.0 annot-version=v1.0 MGYEALGILARMRDAGVKPSPSAITILFKFLFKVGDLEGALIFFRDIVRIGCQPDNYNINTIIHGFCQRGHVRVGESLLYIMQKFRCQPDVYTYNILINA YCMRAQTSEALCWLDSMIRSGCKPTVSTVNTVVNAFCSKGKVEEARKIFDGIHELGLSPNISIFNTMLNGYLKAKDVDRANMLYDEMKSSGIPPDGVTFN ILVAGYYRYGRGEDADRLLTDLSVLEFVPPSALNDITIARLCWAGHLDKATQLLKDILQKGVCVSIVAFNSVIVACCQLGEEENAYETYKLMVSFGISPS SLTCSSLLMGLSIKGQLQEATELLHKMIEKGFHIDRKAFTVILDGYFKTGDVDRACSLWNEMESMGTCFDVVAYSAFIDGLSKAGMMEEAYSVFLEMSVK GCIPNVFTYNSLIVGFCNSGNLNQALQLEREMRQKGFHPDIFTINIIINGFCNLGNMKLAEDAVAAMFQYSLTPDIVTYNTLIGGYCKAFQMVHADEVVK KMYAGGWEPDITTYNIRIHGFCSNQKMNRAVFLLNELITMGIVPNTVTYNTMIKGVCMDVLDRAVILSARLLKLGFAPNVSTINTLLSQFCRQGMPERTL MWIQKLREVPLALDEISYKITDRAYSNIQKEAEVARATYEKSLFLDFLMYITYDYLCRNISQAQTITNEDPPKLAACIGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	0	1
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	1.4	0.8926
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10013176 [exp]	1.7	0.8829
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	4.2	0.8596
AT3G50430			unknown protein		Lus10022468 [exp]	5.9	0.8616
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	7.9	0.8398
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10018991 [exp]	8.9	0.8406
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	11.0	0.8356
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	11.3	0.8436
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	11.4	0.8841
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	16.0	0.8794

Compare expression of checked genes

Lus10022401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.