Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1) AT3G23610 76 / 3e-16 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 70 / 3e-14 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT5G23720 62 / 3e-10 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G55270 57 / 7e-09 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 43 / 0.0002 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018112 [exp] 641 / 0 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Lus10013913 [exp] 138 / 7e-40 AT4G18593 169 / 6e-55 dual specificity protein phosphatase-related (.1) Lus10001888 [exp] 125 / 3e-35 AT4G18593 149 / 5e-47 dual specificity protein phosphatase-related (.1) Lus10013914 [exp] 125 / 4e-35 AT4G18593 148 / 1e-46 dual specificity protein phosphatase-related (.1) Lus10034033 [exp] 76 / 1e-16 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 76 / 6e-16 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 69 / 2e-13 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 66 / 3e-11 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 65 / 4e-11 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035700 [exp] 522 / 0 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 511 / 0 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.004G056600 [exp] 134 / 2e-38 AT4G18593 172 / 2e-56 dual specificity protein phosphatase-related (.1) Potri.010G033000 [exp] 72 / 5e-15 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 58 / 4e-09 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 58 / 5e-09 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.015G105000 [exp] 58 / 7e-09 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.012G105800 [exp] 57 / 1e-08 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 47 / 1e-05 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10022402 pacid=23171657 polypeptide=Lus10022402 locus=Lus10022402.g ID=Lus10022402.BGIv1.0 annot-version=v1.0 ATGCCGCACCTCGTCCGTGAGAATCTCTTCATCGGCAACATCACCGATGCAGCGGAGGTCCTCCAAGGTACCTCCTCCGACATCACTCACCTCCTTTCCG TCTTGAGCTCCGCCTCCATCTCTTTCTTCTCCGAGTGGCGCCCCAGCCTCTCCATCCCCACCAAGGAGATTAAGAAGGTTTACTTCAACCGCCAGCGGGA CGGTCCTGCTCCTGACCAGGATGATGATGATTCCGGCTCCAAGCTTATGTACTCGTTGGAGTACGCCGGCAACGACTTGAAGTTAGTTCGGATGGCGGTG CCGATTAGGGATACGGAGAGCGAGGACCTGTTGGATTATTTGGAGATGTGTTTGGATTTCATTGATCGTAGTCGGAAAGAAGGCTCTGTTTTAGTTCACT GCTTTGCTGGTGTGTCCAGAAGTGCAGCTGTGATTACAGCATACTTGATGAGAAGTGAACAACTCAGTCTTGAAGATGCTCTTAAATCACTTAGGGAAAG CTGCGAGTTTGTTTGCCCAAATGATGGCTTTCTAGATCAGTTAAAAATGTACGAGGATATGGGCTTCAAGGTCGATCATGGTAGTTCAGTTTACAAGCGC TTCCATGTGAAAATATTAGGTGACAGCTTTAACAGGGGAGACAAGATAGACAGTGCTCAGTTTGCTGCGGATCCTGGTGTAGCTGCAGAAGTCACACCAC CACCAAATGGAGAAAGAAAGCGTGTCCAAGCATACCGATGCAAAAAGTGCAGAAGGCTTGTTGCATTACAGGGAAATGTTGTAGATCATGTTCCGGGAGA GGGCGAAACATCTTTCTCGTGGAACAAACGAAAAAGTGGGAATCCATTTAGCAAGTCCGACGAGGCGGATTGTTCATCCATCTTTATCGAGCCTCTACGA TGGATGACTGCAGTGGAAGAAGGGGGGCTAGAAGGGAAGTTGGCATGCGCTCACTGCGACGCTAGGTTGGGATACTTCAATTGGGCGGGGATACAGTGCA GCTGTGGGAGTTGGATTACCCCTGCTTTCCAGCTTCACAAAGGCCGAGTCGACGTCAGCACCGTGTAA
AA sequence Show only first row Show all	>Lus10022402 pacid=23171657 polypeptide=Lus10022402 locus=Lus10022402.g ID=Lus10022402.BGIv1.0 annot-version=v1.0 MPHLVRENLFIGNITDAAEVLQGTSSDITHLLSVLSSASISFFSEWRPSLSIPTKEIKKVYFNRQRDGPAPDQDDDDSGSKLMYSLEYAGNDLKLVRMAV PIRDTESEDLLDYLEMCLDFIDRSRKEGSVLVHCFAGVSRSAAVITAYLMRSEQLSLEDALKSLRESCEFVCPNDGFLDQLKMYEDMGFKVDHGSSVYKR FHVKILGDSFNRGDKIDSAQFAADPGVAAEVTPPPNGERKRVQAYRCKKCRRLVALQGNVVDHVPGEGETSFSWNKRKSGNPFSKSDEADCSSIFIEPLR WMTAVEEGGLEGKLACAHCDARLGYFNWAGIQCSCGSWITPAFQLHKGRVDVSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18593			dual specificity protein phosp...		Lus10022402 [exp]	0	1
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	1.7	0.9118
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10025668 [exp]	6.2	0.8463
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	9.4	0.9028
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	10.0	0.8553
AT1G47410			unknown protein		Lus10009767 [exp]	15.2	0.8902
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	18.5	0.8608
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10009819 [exp]	19.3	0.8524
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	22.5	0.8938
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10005051 [exp]	24.0	0.8788
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	24.2	0.8783

Compare expression of checked genes

Lus10022402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.