Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41150 560 / 0 unknown protein AT3G56750 558 / 0 unknown protein AT2G04280 83 / 6e-17 unknown protein AT4G12700 82 / 1e-16 unknown protein AT4G08810 76 / 1e-14 SUB1 calcium ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018111 [exp] 803 / 0 AT2G41150 555 / 0.0 unknown protein Lus10023250 [exp] 640 / 0 AT2G41150 547 / 0.0 unknown protein Lus10008860 [exp] 636 / 0 AT2G41150 545 / 0.0 unknown protein Lus10041091 [exp] 86 / 6e-18 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 86 / 9e-18 AT2G04280 828 / 0.0 unknown protein Lus10013761 [exp] 75 / 3e-14 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039176 [exp] 73 / 1e-13 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 56 / 2e-08 AT4G08810 463 / 5e-163 calcium ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035600 [exp] 640 / 0 AT3G56750 549 / 0.0 unknown protein Potri.006G040400 [exp] 627 / 0 AT3G56750 567 / 0.0 unknown protein Potri.014G170200 [exp] 82 / 1e-16 AT2G04280 862 / 0.0 unknown protein Potri.001G005500 [exp] 81 / 2e-16 AT4G08810 762 / 0.0 calcium ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022403 pacid=23171730 polypeptide=Lus10022403 locus=Lus10022403.g ID=Lus10022403.BGIv1.0 annot-version=v1.0 ATGGCGACAACTCACAAGCCTCTGAAGCTGAAACACCGGCCCAGATCCTCTATCTTAAACCTGCTGATCTGGGTAGCCGCGGTTGCACTTCTTTTCATCT TCTCATCCCTAATTTCAACGAATGGGTCCTCCTTCCCCTCTATGAATATCATCAAGGGGCTTATGAGCTCCAAGCGATCCAAGCGGGAGCATACTCTGCA TGACAAGTATTTGTACTGGGGGAATAGAATTGATTGTCCTGGAAAGCATTGCGACTCTTGTGAAGGTCTGGGTCACCAGGAGTCCAGCCTCAGGTGTGCT CTTGAGGAGGCTTTGTTTCTCAACAGAACTTTTGTCATGCCTTCTAGAATGTGTATCAACCCAATTCACAACGAGAAGGGAATTCTTCATCATTCTGCCA ATTCAAATCCTGAAGAAAGGTGGACGTCGAACTCTTGCAGTATGGACTCCTTGTACGATATAGACCTCATGTCTGAAACTGTACCTGTTATCTTGGATAA TTCAAGAGAGTGGTTTCATGTTGTTTCTACTGCGATGAAGTTGGGATCAAGGGGAATTGCCCATGTACAAGGAGTTAGTAGATCTGCACTCAAAGAAGGC AGTCACTACACTAACCTATTGCTCATAAATCGAACTGCAAGCCCTCTTTCATGGTTCATGGAGTGCAAAGACAGAAACAACCGCAGTGCAATAATGCTTC CATACACATTTCTACCTTCAATGGCAGCAGAGAGATTGCGAGATGCTGCGGACACGATCATAGCGCAACTTGAAGATTATGATGCTATCCATGTTCGCCG CGGCGATATAATCAAAACAAGGAAGGATAGGTTTGGTGTTCCTCGAACCCTTCATCCTCATTTGGACAGGGATACGCGCCCAGAATTTATGCTTCGGAGA ATTGAAAAATGGGTCCCTCCTGGAAGAACTCTATTTATTGCTTCAAATGAGAGAACACCAAATTTCTTTTCACCTCTTTCTGTCAGATATAAGCTAGCAT ATTCGTCAAACTACAGCAAGATGCTGGAGCCTTTGATTCAGAACAACTACGAACTCTTCATGATTGAAAGGCTGATATTGCGGGGTGCAAAAACATTTAT CAAAACATACAAGGAAGATGAGACTGATCTCAGCCTGACCGACGACCCAAAGAAGAACACAAAGATATGGCAACTGCCTGTGTATACAGCTGAAGACTAA
AA sequence Show only first row Show all	>Lus10022403 pacid=23171730 polypeptide=Lus10022403 locus=Lus10022403.g ID=Lus10022403.BGIv1.0 annot-version=v1.0 MATTHKPLKLKHRPRSSILNLLIWVAAVALLFIFSSLISTNGSSFPSMNIIKGLMSSKRSKREHTLHDKYLYWGNRIDCPGKHCDSCEGLGHQESSLRCA LEEALFLNRTFVMPSRMCINPIHNEKGILHHSANSNPEERWTSNSCSMDSLYDIDLMSETVPVILDNSREWFHVVSTAMKLGSRGIAHVQGVSRSALKEG SHYTNLLLINRTASPLSWFMECKDRNNRSAIMLPYTFLPSMAAERLRDAADTIIAQLEDYDAIHVRRGDIIKTRKDRFGVPRTLHPHLDRDTRPEFMLRR IEKWVPPGRTLFIASNERTPNFFSPLSVRYKLAYSSNYSKMLEPLIQNNYELFMIERLILRGAKTFIKTYKEDETDLSLTDDPKKNTKIWQLPVYTAED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41150			unknown protein		Lus10022403 [exp]	0	1
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	2.6	0.8872
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	3.2	0.8505
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	3.7	0.8706
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10012014 [exp]	5.7	0.8436
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10005794 [exp]	5.9	0.8648
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	6.0	0.8619
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	6.2	0.8699
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	7.7	0.8471
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	9.4	0.8502
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	10.0	0.8357

Compare expression of checked genes

Lus10022403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.