Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24490 636 / 0 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 501 / 2e-168 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1) AT3G59380 76 / 1e-14 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031441 [exp] 1153 / 0 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10001518 [exp] 1061 / 0 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10015954 [exp] 86 / 8e-18 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10000763 [exp] 86 / 1e-17 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1) Lus10042569 [exp] 51 / 3e-06 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225100 [exp] 854 / 0 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Potri.007G127500 [exp] 86 / 5e-18 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.013G047100 [exp] 49 / 8e-06 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01239 [flax] [poplar] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Lus10022404 pacid=23171768 polypeptide=Lus10022404 locus=Lus10022404.g ID=Lus10022404.BGIv1.0 annot-version=v1.0 ATGATCTTGAAGGAAAATTCTACTGTTTACGATGGCTGGTCTGACTCTATCTATTGTAGTCATGAATGGTATTGTGATTTCCGCTTTGCTGGCATTGATG CCAGTGCTGCTGAATTCAGCAAGATTGCAGTGCTAGAGTCAAGAGTACTAAACGGCACACAAACAATGCACGGCCGCCCTCGTAAACCCTTGAAGCCTGT GGATGAAGCTGGATTACTTGCCAAGGCCGAGAAGCTCCGTTCCCTCCAATCTGAATTCATTTCCAATCACCAGAACAAAATTTACACCAAGGACGCTGTA GAGTTGAGTGCTAAACTTCTGGAGATTAATCCTGAGTCGTACACTGCTTGGAACTATAGGAAACTTGCTGTTCAGGATAATCTAGCTCTAGCCAGCTCTG AATCCCATCCCGACTCAGTTGACTCCATTCTTGATGTTGAACTTACAGTGGTCGAGAATGCATTGAAGCAAAACTATAAATCATACGGAGCTTGGCACCA TAGGAAATGGGTGCTGTCTAAAGGGCATTCTTCTGTCGATAAGGAGTTAGGGCTTCTGGACAAATTCCAATCCAAGGATGCACGCAATTTTCATGCCTGG AACTACCGCAGATTTGTGGCTGCATTAATGGAACGGTCGGATGAGGATGAACTAGAGCACACCCAGAATCTGATTGAGAAAAATCTGAGCAACTATTCTG CCTGGCATAATCGCAGTTACATTTTTGGGAAAAATTTCAGTGTACTTCTTACAAATTTGATGAACAAGAAGGCTCAAGGATTTATCAATAGAGAAGAGGT TCTAACCAGGGAGTATGAATTGGTACGTGAAGCTCTTTTTACCGATGAAGATGATCAAAGTGGCTGGTTCTATCATCTTTGGCTTCTTGATCAAACTGTC AGATCTGAGTATCCCCTGCTTGCTTCTTCATGGCCTGTTCATGGCTCTGATATTACCTTTCTATCAGCTGATTTCCGCAGTCCTCGTGCTTCTCCATTGA ATCTGTTCAGTTTCAGTTCAAAGAAATTTCCACTCATTCTTTACTTCAACCAGTCTGTTGAAGGTGTAAACTCATCTACTGTAACCGTTTCAGATGGGTT TAACTCAACTACTGATCTTATTTGGAAACCACTGTCTATAAATGACTCTCCAAGTGCAAAAGTGTGGACTACACATTTAGATCTCCCTAATAAGGATCCC GACTCTTCTGAAGCTTATCAGGTGGAGGTGAAGGTTGGACACTCGCCAGGGATTGTTTCTTCCACCGGTGTCCAGTATCATTGTCCTTGTCAGATTTCGT TTCAACTGCATGTGCAAAATGCCAAACTTGAATCTGGAGAAGGGTTAAGTTCTAGGAGGATGCAGTGGAAAGATGATTGTTTCTCTCTTTATGAACCTGG TTGTGCAGCACCTGCTCTGATTGACCTACTTGACAACCTAAGAATCAAGAATGGACCAGAACTAACAGCTTCACCGTGGCAAGAAAGAATCTTAGATGAA GAGACTAGCATCTTCCGTGAGTTATTGGACTGTAAAATTGGGAAGCTGACCGTGGCTAGACTGTTGACTGCTTACGATATATTGAGACCTTTTGATAAAC AAGTCCACTCAAAGGAAGTTCTAGAGCTATACAGTGAGCTAATGGAGTTGGATCCTCCTCATCACCAATATTACAAAGACAATCATAGCTTGGTTTTATT GCAACAGGTGACTTCCAGTAAGGAGTCTTTGCTGAGTCATTGCTATAACTATAGCGACCCAACTTTGTCGACGACTTGTGGTCCCTTGTGTTTGCGACTC AACAAACTAGCAATTTCACGGTTGGGATCGCTTGAGAAGTTACTATGGGTTCAAGTGCTAGACCTCGGCAACAATGAACTTCAATCAATTGAAGGAATGG AGGCAATGCAACTCCTGTCGCACCTGAGTTTGAGTAACAACAAATTGAGGAGTTTCAGTGCTTTGGAGCCTCTAAGACAAGTAGCGTCACTGAAAGTGTT GGACGTTTCGTATAACGAAATAGGTGCACATTCCATCGACACAACCAGAAATCAATTGTGTTCGCCGTTGTCGCATTATTCAGTTGGAAGTGGTGATTGG AACAGCGATGATGCGAGTTGGAGGGACTATTGGGAAGCCTATTTCATCCTGAAAGACGTGAGGTTAACTCAAATAGACGTGGCGGGGAATGCAATTGCCG GTGAGAGTTTCACCTTGTTTCTGCAAAATGCTGTGCCTACTCTCAAGTGGGTGGATGGTGTACAAGTAAAATGA
AA sequence Show only first row Show all	>Lus10022404 pacid=23171768 polypeptide=Lus10022404 locus=Lus10022404.g ID=Lus10022404.BGIv1.0 annot-version=v1.0 MILKENSTVYDGWSDSIYCSHEWYCDFRFAGIDASAAEFSKIAVLESRVLNGTQTMHGRPRKPLKPVDEAGLLAKAEKLRSLQSEFISNHQNKIYTKDAV ELSAKLLEINPESYTAWNYRKLAVQDNLALASSESHPDSVDSILDVELTVVENALKQNYKSYGAWHHRKWVLSKGHSSVDKELGLLDKFQSKDARNFHAW NYRRFVAALMERSDEDELEHTQNLIEKNLSNYSAWHNRSYIFGKNFSVLLTNLMNKKAQGFINREEVLTREYELVREALFTDEDDQSGWFYHLWLLDQTV RSEYPLLASSWPVHGSDITFLSADFRSPRASPLNLFSFSSKKFPLILYFNQSVEGVNSSTVTVSDGFNSTTDLIWKPLSINDSPSAKVWTTHLDLPNKDP DSSEAYQVEVKVGHSPGIVSSTGVQYHCPCQISFQLHVQNAKLESGEGLSSRRMQWKDDCFSLYEPGCAAPALIDLLDNLRIKNGPELTASPWQERILDE ETSIFRELLDCKIGKLTVARLLTAYDILRPFDKQVHSKEVLELYSELMELDPPHHQYYKDNHSLVLLQQVTSSKESLLSHCYNYSDPTLSTTCGPLCLRL NKLAISRLGSLEKLLWVQVLDLGNNELQSIEGMEAMQLLSHLSLSNNKLRSFSALEPLRQVASLKVLDVSYNEIGAHSIDTTRNQLCSPLSHYSVGSGDW NSDDASWRDYWEAYFILKDVRLTQIDVAGNAIAGESFTLFLQNAVPTLKWVDGVQVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10022404 [exp]	0	1
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	5.8	0.7839
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	7.5	0.7141
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	17.1	0.7555
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	18.5	0.7527
AT1G03180			unknown protein		Lus10000654 [exp]	24.6	0.7324
AT5G17620			unknown protein		Lus10001340 [exp]	31.1	0.7177
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	34.9	0.6610
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	36.1	0.7046
AT2G34050			unknown protein		Lus10013954 [exp]	38.5	0.7219
AT2G45320			unknown protein		Lus10030280 [exp]	42.0	0.7133

Compare expression of checked genes

Lus10022404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.