Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49240 715 / 0 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G10270 274 / 5e-81 GRP23 glutamine-rich protein 23 (.1) AT1G12300 169 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 167 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 157 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 156 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 152 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G16880 149 / 9e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 147 / 2e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 147 / 4e-37 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018109 [exp] 1073 / 0 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002990 [exp] 272 / 1e-79 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10024469 [exp] 209 / 4e-57 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10018019 [exp] 157 / 8e-41 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014245 [exp] 155 / 7e-40 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10042016 [exp] 155 / 7e-40 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012328 [exp] 149 / 1e-37 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 148 / 3e-37 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 145 / 6e-37 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015400 [exp] 758 / 0 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G227800 [exp] 265 / 7e-77 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.003G002950 [exp] 265 / 4e-76 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.013G130600 [exp] 170 / 7e-46 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 169 / 1e-44 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 162 / 2e-42 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 161 / 6e-42 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 160 / 6e-42 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 159 / 2e-41 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 159 / 3e-41 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022406 pacid=23171727 polypeptide=Lus10022406 locus=Lus10022406.g ID=Lus10022406.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCCAAACCCGCTTTCTTCGCCCGCTTCAGAAACCTATCCATTCCCCTCTACCACAATCACCACCGAAGTCCCCTCCTCCCGCCTCCGCCAA TCTTCGCCGTCCGCTTCCTCTCCTTCTCCAGCCCAGAAGAAGCCGAGGCAGAACGCCGTCGCCGCAAGCGTCGCCTCCGCATCGAACCCCCGCTCTCTTC CGCTCACCGCGCTCAGCAGCAGCAGCAGCAACAGATTCCCAAACCTAAACAAAACCCTAACGAATTCAAACTTCCCGAACCTATCTCCGCCCTCTCCGGC AACCGCCTAACCCTCCACAATCGCATCCTAACCCTAGTCAGGGAGAATGACCTCGACGAGGCGGCGCTCTTCACCCGTCACTCTGTCTACTCCAACTGTC GTCCCACCATCTACACCGTCAATGCAGTCCTCAATGCCCAGTTTCGCCAGTCCAAGTACGCCGATTTGCTCTCTCTTCACCGTTTCATCATCCAAGCAGG TATCGCTCCCAACGTTATCACCCACAATTTGGTGTTCCAGACTTACATGACATGCCGTAAACCGGATACTGCAATGGAGATCTATAAGCAGCTGATGAAT GACGCTCCCGTGGGTCCTTCTCCCACGACCTATAGGATTTTGATTGATGGCTTGGTGAATAATGGGATGGTTGATAAGGCTTTGCAGCTGAAGGAAGAGA TGGTGGAGACCATAGCCTTCTCTCCTGACCCTCTTATTTATCATTATTTGATGAATGGCTGTGTGAAGAACAACGATGCTGATGCAGTTTTTAGGCTCTA TGAGGAGTTGAAGGAGAAGATGGGTGGATTTGTGAGTGATGGAGTAGTTTATGGAGGTCTGATGAAGGGATATTTTATGAGGGGGATGGAGAAGGAGGCC ATGGAGTGTTACGAGGAAGCGGTTGGTGAGAATTCCAAGGTCAAGATGACTGCCATTGCCTACAACTCTGTGCTGGATGCTTTATGCAAGAACGATAGGT TTGATGAAGCTTTGAAGTTGTTTGACAGAGTGATTCAAGAGCATAACCCACCGAGACATTTGGCTGTGAACTTGGGTACCTTTAACGTCATGGTTGACGG GTATTGCTCGAACAGGAGGTTTAAGGATGCCATTGATGTTTTCAGGAGGATAGGTGATTATAGATGCAATCCAGACACATTATCCTTCAATAACTTAATG GATCAGTTGTGTGAAAATGGGATGCTGGTTGAGGCTGAAGAGGTATATGGTGACATGGATGGAAAGGCGGTGAAACCAGATGAATATACCTTTGGATTGC TGATGGATGCTTGCTTTAAAGAAGGTAGAATCGATGATGGTGCTGCTTATTTTAGGAAGATGGTTGATTCAGGTTTGAGGCCGGATTTGGCGGTTTACGA TAGATTGGTTGATACATTGGTTAAGGCTGGGAAGATTGACGAGGCAAAATCGTTCTATGAGCTGATGGTTAAGAAATTGAAGATGAACGATGAGAGCTAC AAGTACATAATGAAGGCCCTTAGCGATGAAGGGAGGTTGGATGAAGTGCTGAAATTGGTTGATGGGATGTTAGATGACGAGTCTATAGACTTCAACGAGG AACTGCAGGAGTTTGTGAAAGGAGACTTGTTGAGCAAGGAAGGAAGAGAAGAAGAACTGACCAAGCTTATGGAAGAGAAAGCGAGGCAGAAGGCTGAAGC AAAGGCAAAAGAGATTGAAGAAGCTGAGGCTACCAAGAGAAGGGCTAAAGTTGCGATTGCTTCTTTGTTCCCATCAAAGCTGATTGGGAACAAGGAAAAT GCAGAGGAAACCAACAACGAGGCTGCTGCTGTTGCGGATGAGGAAGCTGCTGTCGTAGGGTCTGTATCTGACAATGCAGATTCGAGAGACGAACATCAGC TAGCTTGA
AA sequence Show only first row Show all	>Lus10022406 pacid=23171727 polypeptide=Lus10022406 locus=Lus10022406.g ID=Lus10022406.BGIv1.0 annot-version=v1.0 MALSKPAFFARFRNLSIPLYHNHHRSPLLPPPPIFAVRFLSFSSPEEAEAERRRRKRRLRIEPPLSSAHRAQQQQQQQIPKPKQNPNEFKLPEPISALSG NRLTLHNRILTLVRENDLDEAALFTRHSVYSNCRPTIYTVNAVLNAQFRQSKYADLLSLHRFIIQAGIAPNVITHNLVFQTYMTCRKPDTAMEIYKQLMN DAPVGPSPTTYRILIDGLVNNGMVDKALQLKEEMVETIAFSPDPLIYHYLMNGCVKNNDADAVFRLYEELKEKMGGFVSDGVVYGGLMKGYFMRGMEKEA MECYEEAVGENSKVKMTAIAYNSVLDALCKNDRFDEALKLFDRVIQEHNPPRHLAVNLGTFNVMVDGYCSNRRFKDAIDVFRRIGDYRCNPDTLSFNNLM DQLCENGMLVEAEEVYGDMDGKAVKPDEYTFGLLMDACFKEGRIDDGAAYFRKMVDSGLRPDLAVYDRLVDTLVKAGKIDEAKSFYELMVKKLKMNDESY KYIMKALSDEGRLDEVLKLVDGMLDDESIDFNEELQEFVKGDLLSKEGREEELTKLMEEKARQKAEAKAKEIEEAEATKRRAKVAIASLFPSKLIGNKEN AEETNNEAAAVADEEAAVVGSVSDNADSRDEHQLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	0	1
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	1.7	0.8964
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	2.0	0.8941
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10013343 [exp]	2.0	0.8622
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10000244 [exp]	6.2	0.8222
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	7.7	0.8351
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	8.0	0.8435
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	8.5	0.8481
AT5G23070			Thymidine kinase (.1)		Lus10039055 [exp]	8.7	0.8300
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	9.7	0.8510
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	9.9	0.8307

Compare expression of checked genes

Lus10022406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.