Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24270 298 / 2e-103 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G17615 272 / 1e-93 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 270 / 8e-93 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26570 260 / 2e-88 ATCBL3 calcineurin B-like 3 (.1.2) AT1G64480 258 / 5e-88 CBL8 calcineurin B-like protein 8 (.1) AT5G55990 257 / 3e-87 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G33000 248 / 1e-83 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G16350 204 / 2e-66 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 193 / 2e-62 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 179 / 8e-57 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018108 [exp] 379 / 8e-136 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 272 / 3e-93 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10030252 [exp] 263 / 7e-90 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10023069 [exp] 262 / 2e-89 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10001816 [exp] 261 / 5e-89 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 262 / 8e-87 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 254 / 3e-86 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10015630 [exp] 245 / 3e-82 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 239 / 9e-80 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015100 [exp] 356 / 1e-126 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 348 / 2e-123 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 303 / 7e-106 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G090200 [exp] 286 / 7e-99 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.003G084200 [exp] 270 / 1e-92 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 265 / 7e-91 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.016G003500 [exp] 263 / 8e-90 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.001G371700 [exp] 262 / 2e-89 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 262 / 2e-89 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 254 / 2e-86 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022407 pacid=23171693 polypeptide=Lus10022407 locus=Lus10022407.g ID=Lus10022407.BGIv1.0 annot-version=v1.0 ATGGGTTGTTTCCAGTCGAAGACGACTAAACAAACTCCCGGATACGAAGAGCCCATTGTTCTTGCTGCTGAAACACCTTTTACAGTGAGCGAAGTTGAGG CATTGTATCAGCTCTTCAAGAAGTTGAGCAGTTCGATAATTGATGATGGTCTGATTCACAAGGAAGAGTTTCAGTTTGCACTCTTCAGAAACAGAAACAG AAGGAACCTTTTTGCAGACAGGGTGTTTGATTTATTTGATGTCAAGCGTAATGGGGTTATTGATTTTGGAGAGTTTGTTCGATCTCTTGGCATCTTTCAT CCAGACGCACCAGTCGAAGACAAGATTTCATTTGCTTTTAGGCTGTATGATCTCAGGCAAACCGGTTTCATAGAGCGAGAAGAGCTGAAGGAGATGGTTG TAGCTCTTCTACATGAGTCAGATCTAAAGCTATCAGATGATGTTGTGGAATTAATCGTTGATAAGACGTTTGGGGATGCAGACATGAAAGGCGATGGGAG AATCGACACGGAAGAATGGAAACAATTTGTGAAGAAGAATCCATCTCTCATAAAGAACATGACTTTACCATACTTAAAAGATATAACGCTGGCATTTCCG AGCTTTATACTGAGTTCTGAAGTGGAAGATTCAGAAATATAA
AA sequence Show only first row Show all	>Lus10022407 pacid=23171693 polypeptide=Lus10022407 locus=Lus10022407.g ID=Lus10022407.BGIv1.0 annot-version=v1.0 MGCFQSKTTKQTPGYEEPIVLAAETPFTVSEVEALYQLFKKLSSSIIDDGLIHKEEFQFALFRNRNRRNLFADRVFDLFDVKRNGVIDFGEFVRSLGIFH PDAPVEDKISFAFRLYDLRQTGFIEREELKEMVVALLHESDLKLSDDVVELIVDKTFGDADMKGDGRIDTEEWKQFVKKNPSLIKNMTLPYLKDITLAFP SFILSSEVEDSEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	2.8	0.8402
AT1G24440			RING/U-box superfamily protein...		Lus10006448 [exp]	5.0	0.7917
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	6.7	0.8509
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	9.5	0.8104
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10031581 [exp]	10.1	0.8346
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	11.6	0.8087
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	15.4	0.8342
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	15.9	0.8182
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	15.9	0.7980
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	22.4	0.7808

Compare expression of checked genes

Lus10022407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.