Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24260 992 / 0 prolyl oligopeptidase family protein (.1) AT2G47390 55 / 2e-07 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018107 [exp] 1423 / 0 AT5G24260 1031 / 0.0 prolyl oligopeptidase family protein (.1) Lus10010007 [exp] 56 / 1e-07 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10039405 [exp] 52 / 1e-06 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10015363 [exp] 46 / 0.0001 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013400 [exp] 1176 / 0 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1) Potri.012G014900 [exp] 1173 / 0 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1) Potri.014G120600 [exp] 59 / 1e-08 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 56 / 1e-07 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00930 [flax] [poplar] DPPIV_N Dipeptidyl peptidase IV (DPP IV) N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10022408 pacid=23171782 polypeptide=Lus10022408 locus=Lus10022408.g ID=Lus10022408.BGIv1.0 annot-version=v1.0 ATGCCTACAACGGACGGTACCAATCCACAAAATGTGGATCATGACTCCATTTTCTTCCCGGTTGAAGAGATTGTTCAATCTCCATTACCAGGATATGTAG CTCCCACCGTTATAAGCTTCAGCCCTGATGATTCCCTGATAACATTCTTGTATAGTCCTGATCACACCCTCACTAAGAAGGTCTATACTTTGGATCTCAA GACTGGGAACCAGGAATTGCTGTTTGCCCCACCAGATGGTGGACTTGATGAGAGTAACATATCAGCAGAAGAAAAATTGAGGAGGGAGCGTCTAAGGGAG CGTGGGTTAGGGGTGACTCGGTATGAATGGGCCAAGACGAGCTCTAAAAAGAAGACCATCATGGTGCCATTGCCCGCCGGGATCTATTTCCAAGAACTGT CTTCTTCAAAGCCTCAACTTAAGCTTCCAAGCTCATCAACTTCGCCCATCATTGATCCTCATCTCTCCCCAGATGGTTCCATGCTGGCTTATGTAAAAGA CAGTGAACTACATGTTCTAAGTCTCTTGTCGAATGAATCAAAACAGCTAACTTCTGGTGCCAAGGGCAGTGAACTGACGCATGGTCTTGCAGAATACATT GCTCAGGAGGAAATGGACAGGAAAAATGGATACTGGTGGTCCCTTGATAGCAAATTCATAGCGTTAACACAGGTTGATTCATCTGAAATACCACTTTTTA GAATTATGCACCAAGGGAAAGACTGTGTTGGTTCCAAGGCACAGGAAGACCATGCTTATCCCTTTGCAGGCGCTTCAAATGTTAAAGTTCGTCTCGGGGT TGTCTCTGTTGCTGGTGGTCCTATCACTTGGATGGATCTACTGTGTGGTGGATCAGATAGATCCAATGATGAGGAATACTTAGCCCGGGTGAATTGGATG CATGATAATGTGCTCGTAGCTCAGGTTTTGAACAGGTCGCACACCAATTTAAAGATCCTGAAGTTTGATATCAAGACAGGGGAGAGAGAAGTCATAATGG AGGAAAATCAAGAGCCCTGGATCAATTTGCATGACTGCTTCACTCCCTTGGACAAGGGTGGACGTTTCATTTGGGCTAGTGAGAAAACTGGATACAGACA TCTATATCTGCACGATGTATATGGAACATGCATAGGACCTATTACAGAAGGCCAGTGGATGGTTGAGCAGATTGCTGGAGTAAATGAGGCTGCAGGGTTC ATTTATTTTACGGCAACCCTCGATAGTCCCTTGGAATCAAATCTGTACCGTGCGAAATTGTATGAGGATGGCAACCAAATCTCTGAGGCTCCTGTCAGAT TAACACATGGTAAGGGGAAGCACGTGGTTGTGCTTGATCACCATATGAGGAATTTTATTGATGTTCATGATTCCATTGATTCTCCCCCTAGGCTTCTACT ATGCTCCTTGCTGGACGGAAGTTTGATAACTTCGCTCTATGAGCATCCGCTCAACATTCCAAGATTTACTAGGCTTGAACTTGAGCCTCCAGAGTTTGTT CAGATACAGGCGAATGATGGAACTATTTTGTATGGAGCTTTGTATAAACCTGACCCCGTTAGATTTGGGCCCCCACCATACAAAACTGTAATCAGTGTGT ATGGTGGTCCTGGTGTGCAGTGTGTCTATGATTCTTGGATAAATTCAGTCGACATGAGAGCACAGTACTTTCGGAGCAAAGGCATCTTAGTATGGAAGTT GGATAACAGAGGAACATCTCGAAGGGGGCTTAAGTTTGAAGGTGCAATCAAATGCAATGCCGGCAGAATTGATGCAGACGACCAGCTGGCTGGAGCAGAA TGGCTCATTAAACAAGGGCTGGCACAAGCTGGCCACATTGGGTTGTATGGATGGAGCTATGGTGGGTACATGTCATCAATGATCTTGGCGAGGTTTCCCG ACACTTTCTGCTGTGCTGTAGCGGGTGCTCCAGTCACTTCGTGGGATGGTTACGACACATTTTATACAGAGAAGTATATGGGACTGCCCGAAGAAGACGC CAAAGCATATGAGTATGGCTCGGTGATGCATCATGTGCATATGCTAAGAGGGAGGTTGATGCTGGTGCATGGAATGATCGACGAGAATGTTCATTTCAGG CACACGGCAAGGCTTGTGAATGCGTTGATAGCAGCAAGAAAACAGTATGAGCTGTTGATATTCCCGGATGAACGGCACATGCCTAGGGGACACAAGGACA GGGTATACATGGAAGAGAGAATCTGGGAATTCATGCAGAGGAATCTGTGA
AA sequence Show only first row Show all	>Lus10022408 pacid=23171782 polypeptide=Lus10022408 locus=Lus10022408.g ID=Lus10022408.BGIv1.0 annot-version=v1.0 MPTTDGTNPQNVDHDSIFFPVEEIVQSPLPGYVAPTVISFSPDDSLITFLYSPDHTLTKKVYTLDLKTGNQELLFAPPDGGLDESNISAEEKLRRERLRE RGLGVTRYEWAKTSSKKKTIMVPLPAGIYFQELSSSKPQLKLPSSSTSPIIDPHLSPDGSMLAYVKDSELHVLSLLSNESKQLTSGAKGSELTHGLAEYI AQEEMDRKNGYWWSLDSKFIALTQVDSSEIPLFRIMHQGKDCVGSKAQEDHAYPFAGASNVKVRLGVVSVAGGPITWMDLLCGGSDRSNDEEYLARVNWM HDNVLVAQVLNRSHTNLKILKFDIKTGEREVIMEENQEPWINLHDCFTPLDKGGRFIWASEKTGYRHLYLHDVYGTCIGPITEGQWMVEQIAGVNEAAGF IYFTATLDSPLESNLYRAKLYEDGNQISEAPVRLTHGKGKHVVVLDHHMRNFIDVHDSIDSPPRLLLCSLLDGSLITSLYEHPLNIPRFTRLELEPPEFV QIQANDGTILYGALYKPDPVRFGPPPYKTVISVYGGPGVQCVYDSWINSVDMRAQYFRSKGILVWKLDNRGTSRRGLKFEGAIKCNAGRIDADDQLAGAE WLIKQGLAQAGHIGLYGWSYGGYMSSMILARFPDTFCCAVAGAPVTSWDGYDTFYTEKYMGLPEEDAKAYEYGSVMHHVHMLRGRLMLVHGMIDENVHFR HTARLVNALIAARKQYELLIFPDERHMPRGHKDRVYMEERIWEFMQRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24260			prolyl oligopeptidase family p...		Lus10022408 [exp]	0	1
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	7.7	0.7662
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	9.7	0.8172
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	19.6	0.7907
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009008 [exp]	22.0	0.7102
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	25.9	0.7866
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10020701 [exp]	31.4	0.7839
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	34.2	0.7150
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	34.5	0.7671
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	36.3	0.7793
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	37.5	0.7768

Compare expression of checked genes

Lus10022408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.