Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64620 142 / 2e-43 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT4G15750 43 / 3e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G48010 42 / 9e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038738 [exp] 51 / 5e-08 AT5G64620 67 / 4e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10039120 [exp] 49 / 2e-07 AT5G64620 69 / 5e-15 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10016317 [exp] 46 / 3e-06 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 44 / 1e-05 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037791 [exp] 43 / 3e-05 AT3G17130 131 / 8e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10000822 [exp] 42 / 6e-05 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017347 [exp] 42 / 8e-05 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1) Lus10037792 [exp] 40 / 0.0005 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 40 / 0.0005 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108301 [exp] 181 / 3e-58 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.010G209800 [exp] 73 / 3e-16 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G127500 [exp] 61 / 9e-12 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 58 / 1e-10 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.006G134900 [exp] 55 / 1e-09 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.016G001600 [exp] 53 / 1e-08 AT5G64620 82 / 9e-20 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G013400 [exp] 52 / 3e-08 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G086500 [exp] 46 / 3e-06 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G063000 [exp] 43 / 3e-05 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.003G086600 [exp] 41 / 0.0001 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10022409 pacid=23171680 polypeptide=Lus10022409 locus=Lus10022409.g ID=Lus10022409.BGIv1.0 annot-version=v1.0 ATGGATAACTCCACCATTTGGGCCGTACTCTCCATCCTCCTCATCTCGCCGTTGGCCGGAGCCGACACAAGCTTGATCCAAAAGACGTGCAAATCCACTA AACACTACGACCTCTGCCTCTCCTCTCTTAACTCCAACTCCACCAGCTCAACCGCCGACATCAAGGGACTTGCCCTTATCATGATCGGCTTCGGGATGGC CAATGCCACCGCCACCTCCACTTACCTGTCCTCCCAGCTCGCCGCTGCCGGCACCTCGAACACTAACAACGACCCAGCAGCAGCTCTGAAGAAGGCGGTG CTGAAGGAGTGTGCCGATAAGTACATGTACGCCGGCGAAGCGCTACAAAGCTCAGCTGAAGATTTGGGGATTGAAGATTACGATTACGCCTCCATCCACG TGACAGCGGCCGCCGATTATCCGAATGCGTGTCGTAACGCGTTTCGGAGGAACTCGGGCCGGCTGGTTTACCCGCCGGAGCTTGCTCGAAGGGAAGATGG GCTGAAGCGGATCTGTGATGTTGTTTTGCAGATGATTGATCTTCTTATTGCTAACTAA
AA sequence Show only first row Show all	>Lus10022409 pacid=23171680 polypeptide=Lus10022409 locus=Lus10022409.g ID=Lus10022409.BGIv1.0 annot-version=v1.0 MDNSTIWAVLSILLISPLAGADTSLIQKTCKSTKHYDLCLSSLNSNSTSSTADIKGLALIMIGFGMANATATSTYLSSQLAAAGTSNTNNDPAAALKKAV LKECADKYMYAGEALQSSAEDLGIEDYDYASIHVTAAADYPNACRNAFRRNSGRLVYPPELARREDGLKRICDVVLQMIDLLIAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	0	1
AT5G66580			unknown protein		Lus10000739 [exp]	2.4	0.8342
AT4G28100			unknown protein		Lus10018524 [exp]	4.2	0.8572
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	9.8	0.8556
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	10.2	0.8331
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	11.1	0.8547
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	13.3	0.8326
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	13.5	0.8616
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	24.8	0.7788
AT3G18800			unknown protein		Lus10033505 [exp]	25.4	0.8512
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	30.0	0.7857

Compare expression of checked genes

Lus10022409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.