Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31305 93 / 2e-23 INH3 inhibitor-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018106 [exp] 261 / 8e-85 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10018105 [exp] 132 / 3e-38 AT2G31305 105 / 1e-30 inhibitor-3 (.1) Lus10001873 [exp] 0 / 1 AT4G12560 45 / 2e-05 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G101900 [exp] 97 / 6e-25 AT2G31305 68 / 5e-16 inhibitor-3 (.1) Potri.005G067400 [exp] 86 / 7e-21 AT2G31305 66 / 4e-15 inhibitor-3 (.1) Potri.015G013500 [exp] 54 / 5e-08 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.012G014300 [exp] 47 / 7e-06 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013800 [exp] 44 / 8e-05 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07491 [flax] [poplar] PPI_Ypi1 Protein phosphatase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10022410 pacid=23171636 polypeptide=Lus10022410 locus=Lus10022410.g ID=Lus10022410.BGIv1.0 annot-version=v1.0 ATGTTCTACTACAAGGATTGGAGAGCAGAGGATCAGGCGATATGGGACGATGTCTTGGAAGTGAAAGCTGTAGTGTTCTCTTGGAAAACATGGTCTTGGA AAGTGTTGAAAAATGCCCATAATATCCCTGCTGCCACCTACGATAATCAAGTGGCCGTCAATGGCCATTTGTACTGGATTGGATCTCGAGACGGAATGAA GGATTTCGTTCTTGCGTTCGATATGGCCAGCGATTCGTTTGGTACGATTGAGTGGACGAAGACGTCCGATGATCAGAACTGGGACAGGTTGGATATGGAG ACGAGAGTTACAGTGTTCAAAAGTTGGCTGGTGGGTTTGAGGGAAGACAATGGCGATGATTTCGAGGTGTTGGTGATGTGTGAGAACGGGGGGAGAGTAG AAGGTTCGGACTGGGAGAAGCTATTGAGTTATGGGTGCTTTGACGGGTATTGTGATTATGGTGGGTATTGGAATGGACTTCAAGTTTTAAGGAGGCCACT AAGTAGTTGCCGGACATGCTTCAGTTGGCCGCAAGGGGATATTATATTGAATGCGTTACCAATGTTAGGTAAATTTAGGGGTTATCGTGCGTCAGTTTAT GTGAAATTGCGCGAGTCGCAACCGCCAGCCGATACGATGAGACGAACGGCCACTTCGTCTGCGGCATCTTCCTCCGGAGCAACGTCCACCGAAACAATAG TCCTCGACAACCCTTCCCAGCGTCAACAGCAACCGCCACCTGAAACCCTAGTTCTGCGGCTGAGTCGGCCGAAGAAGAAGGTTTCATGGAAAGAAGGTAC CGTAGACAACGAATTCATGCAGAAGAAGAGCTCTAAGAAGTGCTGCATCTTCCACAAACAGAAGCCCTTTGACGAAGACGACAGCGATGAAGATGAAAAT CATGATCCGGATCATCATCATCATAATCACGATCATCCCTCCAATAGCTGTTGTTCTTCCAATGACGGCCGCTGTGGTTGA
AA sequence Show only first row Show all	>Lus10022410 pacid=23171636 polypeptide=Lus10022410 locus=Lus10022410.g ID=Lus10022410.BGIv1.0 annot-version=v1.0 MFYYKDWRAEDQAIWDDVLEVKAVVFSWKTWSWKVLKNAHNIPAATYDNQVAVNGHLYWIGSRDGMKDFVLAFDMASDSFGTIEWTKTSDDQNWDRLDME TRVTVFKSWLVGLREDNGDDFEVLVMCENGGRVEGSDWEKLLSYGCFDGYCDYGGYWNGLQVLRRPLSSCRTCFSWPQGDIILNALPMLGKFRGYRASVY VKLRESQPPADTMRRTATSSAASSSGATSTETIVLDNPSQRQQQPPPETLVLRLSRPKKKVSWKEGTVDNEFMQKKSSKKCCIFHKQKPFDEDDSDEDEN HDPDHHHHNHDHPSNSCCSSNDGRCG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31305		INH3	inhibitor-3 (.1)		Lus10022410 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	3.6	0.8071
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	6.0	0.7355
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	7.3	0.7217
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	8.1	0.7468
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	18.6	0.7375
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10016573 [exp]	25.4	0.7396
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	25.9	0.6981
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	31.2	0.6941
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	38.3	0.6259
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Lus10027811 [exp]	41.3	0.6712

Compare expression of checked genes

Lus10022410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.