Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24240 731 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT2G46500 715 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 455 / 2e-158 Protein kinase superfamily protein (.1) AT1G13640 223 / 8e-65 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 221 / 1e-64 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT2G03890 220 / 2e-63 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 215 / 1e-61 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT3G56600 206 / 4e-59 Protein kinase superfamily protein (.1.2) AT1G64470 188 / 3e-56 Ubiquitin-like superfamily protein (.1) AT1G27570 102 / 1e-22 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018104 [exp] 1112 / 0 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10001817 [exp] 681 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 613 / 0 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 477 / 1e-166 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 473 / 6e-165 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 223 / 2e-64 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 217 / 4e-62 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 210 / 1e-59 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018367 [exp] 76 / 3e-15 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014600 [exp] 866 / 0 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 837 / 0 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 768 / 0 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 736 / 0 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.010G137400 [exp] 224 / 6e-65 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 220 / 2e-63 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 210 / 2e-60 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.017G101500 [exp] 209 / 8e-60 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 94 / 2e-23 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1) Potri.011G026600 [exp] 76 / 3e-15 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10022411 pacid=23171672 polypeptide=Lus10022411 locus=Lus10022411.g ID=Lus10022411.BGIv1.0 annot-version=v1.0 ATGTCAGTAGCAAGTGTCGCTCTTAGTCCTATTCGGGAGGACTCCTCGAAGTTTTGGGAGAGTTCGCCTCTTAAGCATGGTCTACGTTCAAGGGACTCCA TCTTAATCTTCCTCTCTGTTGTTGGTTCTCTCATCCCTATGCACGTGATGCATTCTGACTCAATTGCTTCTGTAAAGATGAGAATTCAAGCTTCCCGTGG TTTTTTCGTGAAGAAGCAGAAGCTGGTTTTCAGTGGCAGGGAACTGGCTAATAACAACTCACTCGTGTCGGATTATGGTGTTACGGATGGGAATCTACTG CATTTAGTGGTTAGGCTATCCGATGTCCAAACTATAATAGTTAGGACTGCCTGTGGGAAGGAGTTTCAGTTCCACGTGGTAAGGGGTAGAAATGTTGGTT ATGTGAAGCAACAAATTGCAAAGAAGGGGAAAGATTTTGTTCTTCTTGATCAAGAGTTGACTTGTGAAGGTGAGACTCTTGATGACCAGAGGCTTATTAC TGACATATGCAAAAATAATGATGCTGTGGTTCACTTGATTAGTCGTAAGCCAGCGAAAGTAAGGGCAACACCTGTTGAGAAAGGTCTAGAGTTGAGCATT GAGGCACTGGATCTGGCTGAAAAAGGGACTAAGCTTGGAGCAGAGAAAACTTTATCTGTGGACAACCGGTTCGTATGTAGGAAACAGCTATTTAGAGAGA CTTTTATTGAACCTCTGATTGTTAACTCGGAAACTGAATTCCCAGCAGTGATCAGAGAGCTAATCAACTCTACATTGAATGGCTTGGAGTGTGGAAAGGA ACCAATTAGATCTTCTGAGGGATCTGGAGGAGCATACTTCATGCAGGATGCATCTGGTTTGAAATACGTGTCTGTTTTTAAGCCAATTGATGAGGAGCCA ATGGCTGTCAATAACCCTCAAGGTTTGCCCTTGTCACTTGATGGTGAAGGTTTGAAGAAAGGAACTCGCGTTGGAGAAGGAGCAATACGAGAAGTTGCAG CTTACATTTTGGATTATCCAACAAGTGGACCAAGCTCATTACACAAGAAGCAGAAGGGTTTTTCTGGAGTTCCACCCACAGTAATGGTCAAGTGCTTGCA CAGTGGTTTCAATCATCCAGAAGGGTACGATTGTACTGAAAGAAGTGTGAAATTTGGCTCATTGCAAATGTTCATGAAGAACAATGGGAGTTGTGAAGAT ATTGGTCCCAATGCTTTCCCTGTGGATGAAGTTCACAAGATTTCTGTACTAGACATCAGATTGGCAAATGCAGACAGGCATGCTGGAAATATCTTAATGA GCAGAGATTCTAAGAAAGGACAAATTGAGCTTATTCCAATTGATCACGGCTACTGCCTACCTGAAAATTTTGAGGATTGCACATTTGAATGGCTTTACTG GCCACAGGCCAAGCAGCCATACTCGGCTGATACCAGTGCATACATCAAAGCTCTTGATGCAGAGCAGGATATCGCACTTTTGAAGTTCCACGGATGGGAC TTACCATCGGCATGTGCACGGACATTGCGAATTTCAACAATGCTTCTGAAGAAAGGGGTAGAGAAGGGACTTACCCCTTATGCCATCGGAAGCATTATGT GCCGCGAGACGGTAAAGAAGGAATCTGTAATCGAGCAGATCGTGGAGGAAGCACAGGACTCTGTTCTGCCAGGAAGCAGTGAGCTTGCATTTCTGGAATG CGTTTCCCAGATCATTGATTACAGGCTCGAGCGGCTTGTCGGTGAATGTGTAAATATGTAA
AA sequence Show only first row Show all	>Lus10022411 pacid=23171672 polypeptide=Lus10022411 locus=Lus10022411.g ID=Lus10022411.BGIv1.0 annot-version=v1.0 MSVASVALSPIREDSSKFWESSPLKHGLRSRDSILIFLSVVGSLIPMHVMHSDSIASVKMRIQASRGFFVKKQKLVFSGRELANNNSLVSDYGVTDGNLL HLVVRLSDVQTIIVRTACGKEFQFHVVRGRNVGYVKQQIAKKGKDFVLLDQELTCEGETLDDQRLITDICKNNDAVVHLISRKPAKVRATPVEKGLELSI EALDLAEKGTKLGAEKTLSVDNRFVCRKQLFRETFIEPLIVNSETEFPAVIRELINSTLNGLECGKEPIRSSEGSGGAYFMQDASGLKYVSVFKPIDEEP MAVNNPQGLPLSLDGEGLKKGTRVGEGAIREVAAYILDYPTSGPSSLHKKQKGFSGVPPTVMVKCLHSGFNHPEGYDCTERSVKFGSLQMFMKNNGSCED IGPNAFPVDEVHKISVLDIRLANADRHAGNILMSRDSKKGQIELIPIDHGYCLPENFEDCTFEWLYWPQAKQPYSADTSAYIKALDAEQDIALLKFHGWD LPSACARTLRISTMLLKKGVEKGLTPYAIGSIMCRETVKKESVIEQIVEEAQDSVLPGSSELAFLECVSQIIDYRLERLVGECVNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10022411 [exp]	0	1
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	4.0	0.7690
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	4.2	0.8212
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	4.4	0.8609
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	5.3	0.8236
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	8.0	0.7863
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	19.6	0.7435
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	26.2	0.7721
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	26.6	0.8011
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	26.6	0.7708
AT5G27660			Trypsin family protein with PD...		Lus10017093 [exp]	29.4	0.7734

Compare expression of checked genes

Lus10022411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.