Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49220 711 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 682 / 0 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 424 / 4e-139 ATPME3 pectin methylesterase 3 (.1) AT1G53830 406 / 4e-132 ATPME2 pectin methylesterase 2 (.1) AT1G11580 398 / 2e-129 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 389 / 2e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 388 / 5e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 382 / 7e-124 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT4G02300 380 / 6e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 380 / 1e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018103 [exp] 970 / 0 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 419 / 2e-137 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 414 / 8e-136 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 402 / 2e-132 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 395 / 1e-128 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 394 / 7e-128 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 392 / 1e-127 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 392 / 4e-127 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 390 / 3e-126 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013700 [exp] 766 / 0 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 760 / 0 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 437 / 1e-144 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 428 / 9e-141 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 416 / 6e-137 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 412 / 1e-135 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 412 / 3e-135 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 411 / 3e-134 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.012G126800 [exp] 408 / 9e-134 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 409 / 2e-133 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10022412 pacid=23171750 polypeptide=Lus10022412 locus=Lus10022412.g ID=Lus10022412.BGIv1.0 annot-version=v1.0 ATGGACAGAGTCAAACTAGACTACGGCCGCCTCGCCCCCGCCGACCGCACTATCTCCGGCACCACCACAGCCTCGCATCATCCTCCTCCTCCCTCCACCC GTAAACGCAAACTCATCATCCTCTCCCTCCTCTCCCTCGCACTAATCATCGCCTCCGCCATTTCCGCCGCCCTTCTCCTCACCTCCCGCTCCCGAGGTTC GGGCCACCTAGATCCGATCCGACACCGCAGGCCCTCCCAGGCCATATCCCGGACCTGCACCAAAACCCGTTACCCGACCCTCTGCGTGAACTCACTGACA GAATTCCCCGGCTCCCTGACTGCCAACGAGGATGATCTCGTCCACATTTCCTTTAACATGACCCTGCAGCACCTGAACCGGGCCCTCTACCTCTCCTCCT CCATGAGCAGTTCCCTCCCCACCGACGACGAACTTGCCCGCTCCGCTTACGACGACTGCCTCGAGCTCCTCGACGACTCCATCGATGCCCTCTCTCAGTC CCTCTCCGCCGTCGGCGGCGGAGGCGGCGGCGGAGGATCGGCGACAACGACGGACGTGTCCACGTGGCTGAGTGCGGCGCTGACGAATCAGGACACGTGC GCGGAGGGGCTGGCGGACGTGAAGCCCGGGGCGGCGAAGATGGAGATGGAAGGGAAGCTTAAGGATCTGACTGAGCTGATCAGCAATTGCCTGTCGATAT TTTCGGCGACGGACAATGGGGATTTCGCCGGAGTGCCGATTCAAAACAGGCGGCTGCTTGAGTCTGCCGCGACGGCGGAAGAGGAGGGGGAGGAGGAATT AGAGTTTCCCAATTGGGTGGGGAGGAGAGAGAGGAGACTGCTGAGTCTTCCGCCGTCAGCAATTCAGGCAGATATAATCGTGTCGGCAGACGGGAATGGG ACTTACAAGACGATCGGAGAGGCAATTAAGAAGGCGCCGGAGCGCAGCAACCGGCGGACCGTAATTTACGTCAGGGCAGGAAGGTATGAGGAGAGCAACC TGAAAGTGGGGAGGAAGAAATGGAACCTGATGTTCATAGGAGACGGCAAGGGTAGAACGGTCATCACCGGAAAGAAGAGCGTTTTTGACAAGTTGACCAC ATTCCACACCGCTTCCTTCGCGGCGACCGGGGCCGGGTTCATTGCCAGAGACATGACATTCGAGAACACTGCTGGTCCGGCGAAGCACCAAGCGGTGGCA CTCCGGATAGGAGCGGACCACGCGGTGATCTATCGCTGCAATGTGATCGGCTACCAAGACACCCTCTACGTCCATTCCAACCGACAGTTCTACAGGGAGT GCGACATCTACGGCACCGTAGACTTCATCTTCGGCAACGCCGCCGTCGTTCTCCAGAACTGCAGCCTCTACGCCAGGAAACCCATGGACATGCAGAAGAA CACGGTCACCGCCCAGAACCGGAAGGACCCGAACCAGAACACTGGGATCTCGATCCACGCTTCGAGGATACTGGCGACGCCTGACCTCCAGGCGTCCAAG GGAAGCTTCCAGACGTACCTTGGCCGGCCGTGGAAGCTCTACTCGAGGACGGTCGTCATGGTGACGTATATTGGGGACCACGTTCATCCCAAAGGGTGGC TAGAGTGGAATGCCACGTTCGCACTTGACACGTTGTATTATGGAGAGTACATGAATTATGGGCCGGGTGCGGGTGTGGGCCAACGGGTGACGTGGCCTGG GTATCGGGTTATAAAGTCGACGGTGGAGGCGAGCCGGGTTCCGGTGGGGCGGGTTGTATTCGGGTCGGCGGGGGGGCCGTTCGCCCGGGGGGGGGGTGCT TGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTTAA
AA sequence Show only first row Show all	>Lus10022412 pacid=23171750 polypeptide=Lus10022412 locus=Lus10022412.g ID=Lus10022412.BGIv1.0 annot-version=v1.0 MDRVKLDYGRLAPADRTISGTTTASHHPPPPSTRKRKLIILSLLSLALIIASAISAALLLTSRSRGSGHLDPIRHRRPSQAISRTCTKTRYPTLCVNSLT EFPGSLTANEDDLVHISFNMTLQHLNRALYLSSSMSSSLPTDDELARSAYDDCLELLDDSIDALSQSLSAVGGGGGGGGSATTTDVSTWLSAALTNQDTC AEGLADVKPGAAKMEMEGKLKDLTELISNCLSIFSATDNGDFAGVPIQNRRLLESAATAEEEGEEELEFPNWVGRRERRLLSLPPSAIQADIIVSADGNG TYKTIGEAIKKAPERSNRRTVIYVRAGRYEESNLKVGRKKWNLMFIGDGKGRTVITGKKSVFDKLTTFHTASFAATGAGFIARDMTFENTAGPAKHQAVA LRIGADHAVIYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQNCSLYARKPMDMQKNTVTAQNRKDPNQNTGISIHASRILATPDLQASK GSFQTYLGRPWKLYSRTVVMVTYIGDHVHPKGWLEWNATFALDTLYYGEYMNYGPGAGVGQRVTWPGYRVIKSTVEASRVPVGRVVFGSAGGPFARGGGA CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	0	1
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	3.2	0.8395
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10021717 [exp]	3.2	0.8601
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	3.2	0.8794
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	5.5	0.8390
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	5.7	0.8308
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020026 [exp]	7.2	0.7765
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	7.7	0.8197
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	8.9	0.8405
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	11.2	0.8335
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	11.2	0.8498

Compare expression of checked genes

Lus10022412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.