Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 837 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 791 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 785 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 664 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 660 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 638 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 621 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 620 / 0 Glycosyl hydrolase family protein (.1.2) AT5G64570 147 / 9e-37 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT1G02640 144 / 7e-36 ATBXL2, BXL2 beta-xylosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023604 [exp] 1022 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 905 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 877 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10018102 [exp] 872 / 0 AT5G20950 624 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 867 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 846 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 839 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 798 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010656 [exp] 781 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153900 [exp] 888 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 874 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 863 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 832 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 830 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G042800 [exp] 673 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 357 / 1e-119 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 253 / 9e-81 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 252 / 4e-80 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 241 / 6e-75 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022413 pacid=23171732 polypeptide=Lus10022413 locus=Lus10022413.g ID=Lus10022413.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCATCTCTTTACTCCATGTTTACCCTTCTCATCATCATCCTCTTTGGTGCTACTACTACCGCTGCTGCTGACCGCAATCCGAGGACGACTC GCAGCGTAGATGGTGGCTACCTCAAGTACAAAGACCCCAAGCAACCCATCAAAGCCAGAATTCGTGATCTTATGGCGAGGATGACACTTGCGGAGAAGAT CGGTCAAATGGTGCAGATCGACCGCCCTGTGGCAACTGAAGATGCAATGAGGAAGTATTTTATAGGAAGCGTGGTAAGCGTGTTTACGAGTCTCCCTGAC ATTTTGCCGACACAACCACAACCAGCTCACAACAACATCACGGTGGGAAGGTGGGTTTACACCATAAATAAGATCCAAAATGCAGCCCTTTCCACTCCCC TCGCCATTCCAATGTTGTACGGGATTGATGCTGTCCACGGCCACAACTATGCCTACAAAGCCACCATCTTCCCTCACAACATCGGCCTCGGTGTCACTAG GGACCTGGACCTTGTCAAAAGGATTGGAGCTGCCACTGCGGCTGAAATTAGGGCCACCGGGGTCCGTTATGCCTTCTCCCCCACCATCGCTGTTTGTAGA GACCCGAGGTGGGGTCGTTGCTTCGAAAGCTACAGCGAGGACCCAAGCATCGTGAGGCAAATGACAGAGATCATCCCGGGGTTGCAAGGCGACATTCCAC ACAACTCCAACCACGGTGTTCCCTTCATTAATGCTCGTGACAAGACAAAGGTGGTAGCCTGCGCCAAACATTACGTGGGAGATGGTGGAACAGTGAAGGG TATTGACAGGAACAATACAGTGATCACTTGGGATGGACTGATGAAGATCCATATGCTGCCATATCTGGATGCTATTTACAAAGGAGTTGCCACCGTGATG ATATCCTACTCCAGTTGGAACGGTAAGAAGATGCACGCCAACCGTAAACTCGTCACTTCCTTCCTCAAGGATAAACTCAAATTCAGGGGCTTTGTGGTCT CGGATTGGTTGGGGGTTGACAGGATTACTACTCCTGAACATGCAAACTATTCCAAATCCATTCAGACTGCATTGAAAGCAGGGATTGACATGGTGATGGT TCCCTATGGGTTTAGGGAATTCATCAAGGAGCTCACATACAAAGTAGAGAGTCGCATAATCCCCATGTGGAGGATAGATGATGCTGTGTCCAGAATTCTT AGAGTCAAGTTCACGATGGGGTTGTTCGAGACACCACTCGCAGATCTAACAATGGCCAGGGAGCTAGGCAAGAAGGAGCACCGGGAGTTGGCAAGAGAGG CTGTGAGGAAGTCTCTTGTTCTGTTGAAGAATGGCAAACCCGGTGGGGAGCCACTGCTTCCTCTTCAGAAGAAGGGTGCTCCCAAGATTCTGGTGGCTGG GTCTCATGCACACAACTTGGGTTTACAATGTGGTGGATGGACAATTACCTGGCAAGGTCAATCTGGCAACAACATAACATCTGGTACGACCATCCTCGAA GGAGTGAGCAACACAGTCGATCCAAGTACTGAAGTTGTGCACAAGGAGAACCCCGATGTGAATTTCTCTAGATCAAACAACTTCTCCTACGGCATCGTGG TAGTTGGGGAGCAGAACTATGCGGAGTATTTCGGGGACAGCTTCAACTTGACAATTCCAGATGATGGCCTCGCCGCAATCGACAATGTGTGTGGAGCTGT GAGGTGTGTGGTGATCCTCGTAACCGGGCGGCCAGTGGTGATCCAGCACCATGTGGACAAGATTGATGCCCTCGTAGCTGCTTGGCTCCCTGGTAGTGAA GGCGGCCAAGGTGTTGCCGATGTCTTGTTTGGGGATTATGGTTTCACTGGGAAGCTGGCCAGGACATGGTTCAAGTCAGTCGATCAACTTCCCATGAACG TTGGCGACTCGCATTATGATCCGCTTTATCCATTTGGATATGGACTTACCACTGAGCCAACTTATGCTACTAATTGA
AA sequence Show only first row Show all	>Lus10022413 pacid=23171732 polypeptide=Lus10022413 locus=Lus10022413.g ID=Lus10022413.BGIv1.0 annot-version=v1.0 MASSSLYSMFTLLIIILFGATTTAAADRNPRTTRSVDGGYLKYKDPKQPIKARIRDLMARMTLAEKIGQMVQIDRPVATEDAMRKYFIGSVVSVFTSLPD ILPTQPQPAHNNITVGRWVYTINKIQNAALSTPLAIPMLYGIDAVHGHNYAYKATIFPHNIGLGVTRDLDLVKRIGAATAAEIRATGVRYAFSPTIAVCR DPRWGRCFESYSEDPSIVRQMTEIIPGLQGDIPHNSNHGVPFINARDKTKVVACAKHYVGDGGTVKGIDRNNTVITWDGLMKIHMLPYLDAIYKGVATVM ISYSSWNGKKMHANRKLVTSFLKDKLKFRGFVVSDWLGVDRITTPEHANYSKSIQTALKAGIDMVMVPYGFREFIKELTYKVESRIIPMWRIDDAVSRIL RVKFTMGLFETPLADLTMARELGKKEHRELAREAVRKSLVLLKNGKPGGEPLLPLQKKGAPKILVAGSHAHNLGLQCGGWTITWQGQSGNNITSGTTILE GVSNTVDPSTEVVHKENPDVNFSRSNNFSYGIVVVGEQNYAEYFGDSFNLTIPDDGLAAIDNVCGAVRCVVILVTGRPVVIQHHVDKIDALVAAWLPGSE GGQGVADVLFGDYGFTGKLARTWFKSVDQLPMNVGDSHYDPLYPFGYGLTTEPTYATN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10022413 [exp]	0	1

Compare expression of checked genes

Lus10022413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.